| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is pkn1 [H]
Identifier: 108756974
GI number: 108756974
Start: 4025829
End: 4026878
Strand: Reverse
Name: pkn1 [H]
Synonym: MXAN_3455
Alternate gene names: 108756974
Gene position: 4026878-4025829 (Counterclockwise)
Preceding gene: 108761742
Following gene: 108763634
Centisome position: 44.06
GC content: 68.38
Gene sequence:
>1050_bases ATGTCGGTAATCCAAGCCGCGCTGGGGAAAGCCCGGGTCCAGCGTGCCAGTGGGGACCTGGAAGGCGCCGCCGCGACGCT GGATGCGGTGGCCTGGCAGGCACGCGAGGACGTCCTGCCGATGCTCCAGGACGTGTTGGAGCAGCTCACCGTCATCGAGA ACGGCTTCGTGTTCCGCTATGTCCCCGCGGGCACATTCATCATGGGCAGCGACGACGGCGAACCCGACGAGCGCCCCGCC CACGCGGTGACGTTGTCCGCGTTCTGGATGAGCGACACATCGCTGTCATGGAGCGCCTTCGCTCGCCTCCTGGATTGGCC CGAACCGCCCGAGTTCCCCACGGACGAACAACTCGACGGATTCACCGACAGCTTCGCGTACTTCAACGACTCGAAGATTC GCCTGCAGTACTGCGAGAACGACACCCTGCAGGCCAGTGACTGGCACGCCCACGCCATCCACACGCGATGGGAAACCGGC GACGGCGTCATCAAGACCTCACAGGAATTGTTCGGCACGCCAGCGCGCGCGGGCGAGGGCCCGCTGCGCTATGACCAGAA GCCCATGGTCGCGGTCGCCCCTTCGCTCGCGGAACAGTTCGCGCGGCGCTTGAGCACGCCTTCCGTCACCTATCGCCTGC CCACCGAAGCCGAATGGGAGCGCGCGGCGCGGGGCTGCTTCCGTGGCGCGGCGTACCCATGGGGGAACGAACCTCCAGAC GCGAGCCGCGCGGACTTCGACCGCTTCAACGACTTCTCGCTCCGCCCCATGCGCGCCTTCCCGCCCAACGACTACGGCCT CTTCGGCATGGCGGGCGGCGTGAGCCAGTGGTGCCAGGACCACTACGACGCCGAGTACTACCGGCACTCGCCGAAGACGT CCCCCGTCTGCGTGCTGGGCGAGGACATCCCCAAGCGCACCCACGTCCTGCGCGGCGGCTCGTGGGCGGACTGCGCGGAC GCGCTGCGGGTCAGCTTCCGCTCCGCGAGCGACACCGGGGCGGCGCCCAACATCGGCTTCCGCCTGGTCCGGGTTCCCTC ACGGAGGTGA
Upstream 100 bases:
>100_bases CCGCGTTCGCGGAGGACCCTTGGCAAGCCCAGTCCCTGGGAGCTGCCACGGAGTCACATCCACTGCCCGTGCTCGGCGCG GAGCGGGGACAGGGGGGCGC
Downstream 100 bases:
>100_bases GACCAGCGGCTTGTGAGCCGCCCTACCCCACGGCGGCGACCGGAGCCGCGTCGGCGGTCTCCGGAAGCGCGTCGAAGCTC TCGAACGGGTTCTCCAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MSVIQAALGKARVQRASGDLEGAAATLDAVAWQAREDVLPMLQDVLEQLTVIENGFVFRYVPAGTFIMGSDDGEPDERPA HAVTLSAFWMSDTSLSWSAFARLLDWPEPPEFPTDEQLDGFTDSFAYFNDSKIRLQYCENDTLQASDWHAHAIHTRWETG DGVIKTSQELFGTPARAGEGPLRYDQKPMVAVAPSLAEQFARRLSTPSVTYRLPTEAEWERAARGCFRGAAYPWGNEPPD ASRADFDRFNDFSLRPMRAFPPNDYGLFGMAGGVSQWCQDHYDAEYYRHSPKTSPVCVLGEDIPKRTHVLRGGSWADCAD ALRVSFRSASDTGAAPNIGFRLVRVPSRR
Sequences:
>Translated_349_residues MSVIQAALGKARVQRASGDLEGAAATLDAVAWQAREDVLPMLQDVLEQLTVIENGFVFRYVPAGTFIMGSDDGEPDERPA HAVTLSAFWMSDTSLSWSAFARLLDWPEPPEFPTDEQLDGFTDSFAYFNDSKIRLQYCENDTLQASDWHAHAIHTRWETG DGVIKTSQELFGTPARAGEGPLRYDQKPMVAVAPSLAEQFARRLSTPSVTYRLPTEAEWERAARGCFRGAAYPWGNEPPD ASRADFDRFNDFSLRPMRAFPPNDYGLFGMAGGVSQWCQDHYDAEYYRHSPKTSPVCVLGEDIPKRTHVLRGGSWADCAD ALRVSFRSASDTGAAPNIGFRLVRVPSRR >Mature_348_residues SVIQAALGKARVQRASGDLEGAAATLDAVAWQAREDVLPMLQDVLEQLTVIENGFVFRYVPAGTFIMGSDDGEPDERPAH AVTLSAFWMSDTSLSWSAFARLLDWPEPPEFPTDEQLDGFTDSFAYFNDSKIRLQYCENDTLQASDWHAHAIHTRWETGD GVIKTSQELFGTPARAGEGPLRYDQKPMVAVAPSLAEQFARRLSTPSVTYRLPTEAEWERAARGCFRGAAYPWGNEPPDA SRADFDRFNDFSLRPMRAFPPNDYGLFGMAGGVSQWCQDHYDAEYYRHSPKTSPVCVLGEDIPKRTHVLRGGSWADCADA LRVSFRSASDTGAAPNIGFRLVRVPSRR
Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
Organism=Homo sapiens, GI38202250, Length=315, Percent_Identity=26.3492063492064, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI257470977, Length=243, Percent_Identity=25.5144032921811, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI194248088, Length=302, Percent_Identity=25.8278145695364, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI194248087, Length=149, Percent_Identity=36.241610738255, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI226437577, Length=149, Percent_Identity=36.241610738255, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016187 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017442 - InterPro: IPR005532 [H]
Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 38823; Mature: 38692
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIQAALGKARVQRASGDLEGAAATLDAVAWQAREDVLPMLQDVLEQLTVIENGFVFRY CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE VPAGTFIMGSDDGEPDERPAHAVTLSAFWMSDTSLSWSAFARLLDWPEPPEFPTDEQLDG ECCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC FTDSFAYFNDSKIRLQYCENDTLQASDWHAHAIHTRWETGDGVIKTSQELFGTPARAGEG CCCCCEEECCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEECHHHHCCCCCCCCC PLRYDQKPMVAVAPSLAEQFARRLSTPSVTYRLPTEAEWERAARGCFRGAAYPWGNEPPD CCCCCCCCCEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC ASRADFDRFNDFSLRPMRAFPPNDYGLFGMAGGVSQWCQDHYDAEYYRHSPKTSPVCVLG CCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCHHHHCCCCCCCEEEEC EDIPKRTHVLRGGSWADCADALRVSFRSASDTGAAPNIGFRLVRVPSRR CCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure SVIQAALGKARVQRASGDLEGAAATLDAVAWQAREDVLPMLQDVLEQLTVIENGFVFRY HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE VPAGTFIMGSDDGEPDERPAHAVTLSAFWMSDTSLSWSAFARLLDWPEPPEFPTDEQLDG ECCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC FTDSFAYFNDSKIRLQYCENDTLQASDWHAHAIHTRWETGDGVIKTSQELFGTPARAGEG CCCCCEEECCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEECHHHHCCCCCCCCC PLRYDQKPMVAVAPSLAEQFARRLSTPSVTYRLPTEAEWERAARGCFRGAAYPWGNEPPD CCCCCCCCCEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC ASRADFDRFNDFSLRPMRAFPPNDYGLFGMAGGVSQWCQDHYDAEYYRHSPKTSPVCVLG CCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCHHHHCCCCCCCEEEEC EDIPKRTHVLRGGSWADCADALRVSFRSASDTGAAPNIGFRLVRVPSRR CCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]