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The map label for this gene is scoB [H]

Identifier: 108756835

GI number: 108756835

Start: 4554391

End: 4555047

Strand: Reverse

Name: scoB [H]

Synonym: MXAN_3789

Alternate gene names: 108756835

Gene position: 4555047-4554391 (Counterclockwise)

Preceding gene: 108764087

Following gene: 108758933

Centisome position: 49.84

GC content: 64.84

Gene sequence:

>657_bases
ATGCCACTGACTCGTGAACAGATTGCACAGCGCATCGCCCAGGAGCTGCAGGACGGCTTCTACGTCAACCTGGGTATCGG
CATGCCCACCCTGGTGGCCAACTACATCCCTCCGGGCATGGACATCGTGCTCCAGTCGGAGAACGGCCTGCTGGGCATCG
GCCCCTGGCCCGTGGAAGGCCAGGAGGATCCGGACCTCATCAACGCCGGGAAGGAGACGGTGACGGCGGTGCCCGGCGCC
GCGTTCTTCGACTCGGCCCTGTCGTTCGGGATGATCCGCGGCGGCCACATCGACATGGCCGTGCTGGGTGCCATGGAGGT
CAGCGAAGAGGGCGACCTGGCCAACTGGATGATCCCCGGAAAGATGATCAAGGGCATGGGCGGCGCCATGGACCTGGCCG
TCGGTGCCCAGCGCATCTTCGTGGCCATGGAGCACGCCAACAAGGACGGCAAGCCCAAGATCCTCAAGAAGTGCTCGTTG
CCGCTGACGGGCCTCAAGTGCATCCACCACATCGTCACGGACCACGCGTACATCGACGTGACGCCGCAGGGACTCATCCT
GCGCGAGGTGGCACCCGGAGTGACGGTGGAGCAGGTGCAGAAGCTCACCGAGCCGAAGCTGACGGTGGCCCCCGACGTCC
GTGAGATGAAAGTCTGA

Upstream 100 bases:

>100_bases
ACATCCCGAGCATCTTCGTGAAGCGCATCGTCCAGGCGAAGAACCTCCAGAAGTGGATCGAGCGGCGCACCGTCCGCAAG
TCGGCCTGAGGAGCCCAGCC

Downstream 100 bases:

>100_bases
GCGTGTGGGGATAAGGTGCACCGCCGCGGGCGTTGTACGAACCCCGCGGCGGAGCGCTTCTCATGGCAGACAGTCCCAAC
ACCTCGACCCCTCATCCCCG

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPLTREQIAQRIAQELQDGFYVNLGIGMPTLVANYIPPGMDIVLQSENGLLGIGPWPVEGQEDPDLINAGKETVTAVPGA
AFFDSALSFGMIRGGHIDMAVLGAMEVSEEGDLANWMIPGKMIKGMGGAMDLAVGAQRIFVAMEHANKDGKPKILKKCSL
PLTGLKCIHHIVTDHAYIDVTPQGLILREVAPGVTVEQVQKLTEPKLTVAPDVREMKV

Sequences:

>Translated_218_residues
MPLTREQIAQRIAQELQDGFYVNLGIGMPTLVANYIPPGMDIVLQSENGLLGIGPWPVEGQEDPDLINAGKETVTAVPGA
AFFDSALSFGMIRGGHIDMAVLGAMEVSEEGDLANWMIPGKMIKGMGGAMDLAVGAQRIFVAMEHANKDGKPKILKKCSL
PLTGLKCIHHIVTDHAYIDVTPQGLILREVAPGVTVEQVQKLTEPKLTVAPDVREMKV
>Mature_217_residues
PLTREQIAQRIAQELQDGFYVNLGIGMPTLVANYIPPGMDIVLQSENGLLGIGPWPVEGQEDPDLINAGKETVTAVPGAA
FFDSALSFGMIRGGHIDMAVLGAMEVSEEGDLANWMIPGKMIKGMGGAMDLAVGAQRIFVAMEHANKDGKPKILKKCSLP
LTGLKCIHHIVTDHAYIDVTPQGLILREVAPGVTVEQVQKLTEPKLTVAPDVREMKV

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=215, Percent_Identity=55.3488372093023, Blast_Score=245, Evalue=2e-65,
Organism=Homo sapiens, GI11545841, Length=215, Percent_Identity=53.4883720930233, Blast_Score=241, Evalue=3e-64,
Organism=Escherichia coli, GI1788552, Length=213, Percent_Identity=50.7042253521127, Blast_Score=229, Evalue=8e-62,
Organism=Caenorhabditis elegans, GI17531517, Length=216, Percent_Identity=56.0185185185185, Blast_Score=234, Evalue=2e-62,
Organism=Drosophila melanogaster, GI21358325, Length=214, Percent_Identity=57.9439252336449, Blast_Score=255, Evalue=1e-68,
Organism=Drosophila melanogaster, GI24655794, Length=214, Percent_Identity=57.9439252336449, Blast_Score=254, Evalue=2e-68,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 23406; Mature: 23275

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTREQIAQRIAQELQDGFYVNLGIGMPTLVANYIPPGMDIVLQSENGLLGIGPWPVEG
CCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEECCCCCCCC
QEDPDLINAGKETVTAVPGAAFFDSALSFGMIRGGHIDMAVLGAMEVSEEGDLANWMIPG
CCCCHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCCCCEEEHHHECCCCCCCCCEEECCH
KMIKGMGGAMDLAVGAQRIFVAMEHANKDGKPKILKKCSLPLTGLKCIHHIVTDHAYIDV
HHHHCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
TPQGLILREVAPGVTVEQVQKLTEPKLTVAPDVREMKV
CCCCEEEEHHCCCCCHHHHHHHCCCCEEECCCHHHHCC
>Mature Secondary Structure 
PLTREQIAQRIAQELQDGFYVNLGIGMPTLVANYIPPGMDIVLQSENGLLGIGPWPVEG
CCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEECCCCCCCC
QEDPDLINAGKETVTAVPGAAFFDSALSFGMIRGGHIDMAVLGAMEVSEEGDLANWMIPG
CCCCHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCCCCEEEHHHECCCCCCCCCEEECCH
KMIKGMGGAMDLAVGAQRIFVAMEHANKDGKPKILKKCSLPLTGLKCIHHIVTDHAYIDV
HHHHCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
TPQGLILREVAPGVTVEQVQKLTEPKLTVAPDVREMKV
CCCCEEEEHHCCCCCHHHHHHHCCCCEEECCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]