Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563731
Identifier: 108563731
GI number: 108563731
Start: 1352339
End: 1352890
Strand: Reverse
Name: 108563731
Synonym: HPAG1_1306
Alternate gene names: NA
Gene position: 1352890-1352339 (Counterclockwise)
Preceding gene: 108563732
Following gene: 108563730
Centisome position: 84.75
GC content: 37.32
Gene sequence:
>552_bases ATGGCTATTTGGGGGTGGTGTTTTTTATTTTTATTGTCCTTGATGTGGGGTTTAAGCATGCATGAGTTGGTTTTAAGATC CCAAGCTTTAGGGTTTGAAACGCGCTTAGTCCAATGCGATTTATCGTTCTCTTATGAAAGGTTTATCTCTAAAAGTAAAC GCTCTTTAGCGGTATTAGAAGAGTTTGATTTGTTGGGTTCTGGCTTTGATTTTTCACGCTTGAATGTTGAAAATGACACT CTGGAATTACTCAAAGCGCTGTATTTTAAATTAGAAAAATTAGAAAGCCTGCTTTTAAAAGAAAATTTACTTGAACTAGA GCAAAAGGATCGCATCACTGCTTTAGGGCATGGGTTAATTTGCCTGAAAAAATCAAGCCTGATAGCGCCTCAAACTTATT ACGGGCGTTGTGTGTTAGAGGGGAAAATCCTAGCCTTTTTTGGCGTGGCAAGGGATAAAATTTTTTTAGAAATCACTCGC ATGCATGCCTTAGACATCAAGCGTTATGATTCTTTCATTGTTGATAGCGAAAGAAAAGGCTTGAAATTATGA
Upstream 100 bases:
>100_bases GCGTATTTAGGATTAGGGGTTTCAGCCTTGATTTTACTCTATGAGCAGATCTTAGTGACTAGAGATTATAAAAACATTCC TAAAGCCTTTTTTGTGAGTA
Downstream 100 bases:
>100_bases ACGGGAGCGGTAATGTTATCTTCTAATGATTTGTTTATGGTCGTTTTAGGGGCGATTTTATTGGTGTTGGTGTGCTTGGT GGGGTATTTGTATCTTAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MAIWGWCFLFLLSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLEEFDLLGSGFDFSRLNVENDT LELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLICLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKIFLEITR MHALDIKRYDSFIVDSERKGLKL
Sequences:
>Translated_183_residues MAIWGWCFLFLLSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLEEFDLLGSGFDFSRLNVENDT LELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLICLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKIFLEITR MHALDIKRYDSFIVDSERKGLKL >Mature_182_residues AIWGWCFLFLLSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLEEFDLLGSGFDFSRLNVENDTL ELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLICLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKIFLEITRM HALDIKRYDSFIVDSERKGLKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21183; Mature: 21052
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIWGWCFLFLLSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH EFDLLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEE CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKIFLEITRMHALDIKRYDSFIVDSERKG EEECCCCCCCCHHHCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC LKL CCC >Mature Secondary Structure AIWGWCFLFLLSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH EFDLLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEE CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKIFLEITRMHALDIKRYDSFIVDSERKG EEECCCCCCCCHHHCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC LKL CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA