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The map label for this gene is psd [H]

Identifier: 108563729

GI number: 108563729

Start: 1351023

End: 1351826

Strand: Reverse

Name: psd [H]

Synonym: HPAG1_1304

Alternate gene names: 108563729

Gene position: 1351826-1351023 (Counterclockwise)

Preceding gene: 108563730

Following gene: 108563728

Centisome position: 84.68

GC content: 39.43

Gene sequence:

>804_bases
ATGGTAGCTTTAAGCAACGCTCTTTCAAGGGTTTTTGGCTCTCTCGCTGGTTATGAATTCCCTTCTTTTATCCAAAAAGG
CATCAACGCTCTTTACGTTAAGATCTTTAAAATTGATTTGAGCGAGTTTGAGCCTTTAGAAAATTATAAGAGTTTGAACG
CTCTTTTCACACGCTCTTTAAAAAAAGAACGCCCCTTTGACAAAGCCCCTAATATTTGCATTGCGCCCTGCGACGCTTTA
ATCACTGAATGCGCTTTTTTAGACAACGATAGCGCTTTACAAATTAAAGGCATGCCCTATAAAGCGCATGAATTAGTGGG
CGAAATCAACCCCTTAAACCCTTCTTTTTTCTATGCGAATTTTTACCTTTCGCCCAAAGATTACCACCACTACCACGCCC
CTTGCGATTTAGAAATTTTAGAAGCTCGTTATTTTGCGGGGAAATTACTACCAGTCAATAAGCCCTCATTACACAAAAAC
AACAATCTGTTTGTGGGCAATGAAAGGGTCACACTTGTTGCAAAAGACGTTCAAGGCAATCGATTGTATTTTGTAGCGGT
GGGAGCGTTAAATGTGGGTAAAATGCGTTTTAATTTTGATAAGAATATCCAAACTAACGCTAAAGCCCGTTTCACGCAAA
CCTATTCTTACAACCCGCCGATTAAGGTGAAAAAGGGGGATAATTTAGGGAATTTTGAAATGGGCTCTACGATCGTTTTA
TTCATTCAAAACACCGCTTTTAAGGATTTGAAAGAAAAAAGCGTGAAGTTTGGGGAAAGTATAGGGGAATTTCATGCCAA
CTGA

Upstream 100 bases:

>100_bases
TGAAAATGTATCAAGAAGGCTATAGCGTGGATTCTATTTCTAAAGAATTTAAAGTGAGTAAGGGAGAGGTGGAATTTATA
CTGAACATGGCAGGGTTAAA

Downstream 100 bases:

>100_bases
TAACGATTTAAAAACTTCTATTGTGGAATTGTTGCACGATTTAGACGCGCTTTTAGTGGCCCATTTCTATCAAAAAGATG
AGATTGTAGAGTTAGCCCAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVALSNALSRVFGSLAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKAPNICIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLNPSFFYANFYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLHKN
NNLFVGNERVTLVAKDVQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVL
FIQNTAFKDLKEKSVKFGESIGEFHAN

Sequences:

>Translated_267_residues
MVALSNALSRVFGSLAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKAPNICIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLNPSFFYANFYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLHKN
NNLFVGNERVTLVAKDVQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVL
FIQNTAFKDLKEKSVKFGESIGEFHAN
>Mature_267_residues
MVALSNALSRVFGSLAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKAPNICIAPCDAL
ITECAFLDNDSALQIKGMPYKAHELVGEINPLNPSFFYANFYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLHKN
NNLFVGNERVTLVAKDVQGNRLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVL
FIQNTAFKDLKEKSVKFGESIGEFHAN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=296, Percent_Identity=29.3918918918919, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1790604, Length=240, Percent_Identity=30, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71980843, Length=271, Percent_Identity=28.0442804428044, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71980840, Length=271, Percent_Identity=27.6752767527675, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6324160, Length=168, Percent_Identity=37.5, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321609, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24649526, Length=296, Percent_Identity=29.0540540540541, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24649528, Length=296, Percent_Identity=29.0540540540541, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24649524, Length=296, Percent_Identity=29.0540540540541, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30144; Mature: 30144

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALSNALSRVFGSLAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKAPNICIAPCDALITECAFLDNDSALQIKGMPYKAHELVGEINPLNPSFFYAN
HHCCCCCCCCCEEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLHKNNNLFVGNERVTLVAKDVQGN
EEECCCCCCCCCCCCCCEEEEEHHHCCEEEECCCCCCCCCCCEEECCCEEEEEEEECCCC
RLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVL
EEEEEEEECEEECEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEECCCEEEE
FIQNTAFKDLKEKSVKFGESIGEFHAN
EEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVALSNALSRVFGSLAGYEFPSFIQKGINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKAPNICIAPCDALITECAFLDNDSALQIKGMPYKAHELVGEINPLNPSFFYAN
HHCCCCCCCCCEEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARYFAGKLLPVNKPSLHKNNNLFVGNERVTLVAKDVQGN
EEECCCCCCCCCCCCCCEEEEEHHHCCEEEECCCCCCCCCCCEEECCCEEEEEEEECCCC
RLYFVAVGALNVGKMRFNFDKNIQTNAKARFTQTYSYNPPIKVKKGDNLGNFEMGSTIVL
EEEEEEEECEEECEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEECCCEEEE
FIQNTAFKDLKEKSVKFGESIGEFHAN
EEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA