The gene/protein map for NC_008086 is currently unavailable.
Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is trpS [H]

Identifier: 108563622

GI number: 108563622

Start: 1261487

End: 1262506

Strand: Reverse

Name: trpS [H]

Synonym: HPAG1_1197

Alternate gene names: 108563622

Gene position: 1262506-1261487 (Counterclockwise)

Preceding gene: 108563623

Following gene: 108563621

Centisome position: 79.09

GC content: 39.41

Gene sequence:

>1020_bases
GTGGTTACAATAACACTAACTAAAACAACGAGAAATAACATGCATAAAAAACGAGTCTTTTCAGGCATCCAACCTACCGG
GCAAATCCATTTGGGCAACTATTTAGGAGCGATCAAGCATTGGGTAGAGATGCAAGATGAATATGAAAACCTTTTTTGCG
TCGTCAATTCGCATGCGATCACCCTACCCATAGATCCTGCATTTTTAAAATCCCAAAGCTATGAATTAGTCAAATTGCTT
TTAGCTTGCGGGATTAATCCTAGTCAATCGGGGTTATTCATTCAAAGTGAAGTGGATGAGCACCCGGCTTTAGCATGGCT
ATTAAATTGTCAGGTGTCTATGGGGGAAATGCAAAGAATGACGCAATTCAAAGACAAGTCTTTAAAAAACCCCAAAAGCG
TGAATGTGGGGCTTTTCAATTACCCTATTTTGATGGCGTCAGATATTTTATTATACCAAAGCGATTTAGTGCCAGTGGGC
GAAGATCAAAAACAGCATTTAGAGCTCACGCGAAACATTGCAGAAAGATTTAACAGGGATTTTGGGAACTGCTTTAAAGT
GCCAGAGCCTTTGATCGCTAAAGTGGGGGCAAGGGTTATGGGGCTAGATGATCCAAAAGTGAAGATGAGTAAATCGCATC
AAGGGGCTAACCATGCGATTTTTCTTTTAGATGAGCCAGACATTATTGTAAAAAAAATCAAAAAAGCGGCCACTGATTCT
ATGGGCGTTATTGCGTTTGATGAAAAAAGAGAGGGCATTTTTAACCTTTTAAATATCTACATGCTTTTAAGCAATGAAAG
CCCAGAAAACATAGAAGAACGATTCAAAAATAAGGGCTATGGGGATTTTAAAAAGGAATTGGCTGAAGTGGTGATCCAGG
CTTTAAAACCCATTCAAGAAAGATACAAAGAAATCAGCGATGATGAAGTGAAAGCCATTTTAAATCACGGCGTCAAAAAA
GCCAGGCCTTTAGCGCAAATGACTTACCAAAAGGCTAAAGAACTAATGGGGTTGGTTTAG

Upstream 100 bases:

>100_bases
TTTCAAAACATGGCGTTTGAAAAATTGAGCTATGAAGTGTTACTCTTTTCGGGGATCAAGCGTTCTTAAAAACTAAGATA
AATTAAAATATTAAAATTAG

Downstream 100 bases:

>100_bases
ATGAAAATTTTAAGTTTATGGTTAGGGGTGTTTTATTTCCTTAAGGCTACGCCTTATTTATACTTGGGCGAAGAGCCTAA
ATATAAAGACAATTTCACGC

Product: tryptophanyl-tRNA synthetase

Products: NA

Alternate protein names: Tryptophan--tRNA ligase; TrpRS [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL
LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG
EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS
MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK
ARPLAQMTYQKAKELMGLV

Sequences:

>Translated_339_residues
MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL
LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG
EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS
MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK
ARPLAQMTYQKAKELMGLV
>Mature_339_residues
MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL
LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG
EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS
MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK
ARPLAQMTYQKAKELMGLV

Specific function: Unknown

COG id: COG0180

COG function: function code J; Tryptophanyl-tRNA synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI7710154, Length=328, Percent_Identity=41.7682926829268, Blast_Score=270, Evalue=9e-73,
Organism=Homo sapiens, GI41352700, Length=179, Percent_Identity=53.072625698324, Blast_Score=209, Evalue=4e-54,
Organism=Escherichia coli, GI1789786, Length=331, Percent_Identity=48.3383685800604, Blast_Score=326, Evalue=2e-90,
Organism=Caenorhabditis elegans, GI71982800, Length=337, Percent_Identity=33.8278931750742, Blast_Score=208, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI71982793, Length=337, Percent_Identity=33.8278931750742, Blast_Score=207, Evalue=8e-54,
Organism=Saccharomyces cerevisiae, GI6320474, Length=346, Percent_Identity=41.0404624277457, Blast_Score=221, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24666151, Length=332, Percent_Identity=39.4578313253012, Blast_Score=251, Evalue=7e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001412
- InterPro:   IPR002305
- InterPro:   IPR014729
- InterPro:   IPR002306 [H]

Pfam domain/function: PF00579 tRNA-synt_1b [H]

EC number: =6.1.1.2 [H]

Molecular weight: Translated: 38390; Mature: 38390

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAI
CEEEEEECCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCEE
TLPIDPAFLKSQSYELVKLLLACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRM
EEECCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEHHHCCCCHHHHHHH
TQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAERFNRD
HHHHHHHCCCCCCCEEEHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
FGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS
CCCCCCCCCHHHHHHCCCEECCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQE
CCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RYKEISDDEVKAILNHGVKKARPLAQMTYQKAKELMGLV
HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAI
CEEEEEECCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCEE
TLPIDPAFLKSQSYELVKLLLACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRM
EEECCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEHHHCCCCHHHHHHH
TQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAERFNRD
HHHHHHHCCCCCCCEEEHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
FGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS
CCCCCCCCCHHHHHHCCCEECCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQE
CCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RYKEISDDEVKAILNHGVKKARPLAQMTYQKAKELMGLV
HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]