Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is trpS [H]
Identifier: 108563622
GI number: 108563622
Start: 1261487
End: 1262506
Strand: Reverse
Name: trpS [H]
Synonym: HPAG1_1197
Alternate gene names: 108563622
Gene position: 1262506-1261487 (Counterclockwise)
Preceding gene: 108563623
Following gene: 108563621
Centisome position: 79.09
GC content: 39.41
Gene sequence:
>1020_bases GTGGTTACAATAACACTAACTAAAACAACGAGAAATAACATGCATAAAAAACGAGTCTTTTCAGGCATCCAACCTACCGG GCAAATCCATTTGGGCAACTATTTAGGAGCGATCAAGCATTGGGTAGAGATGCAAGATGAATATGAAAACCTTTTTTGCG TCGTCAATTCGCATGCGATCACCCTACCCATAGATCCTGCATTTTTAAAATCCCAAAGCTATGAATTAGTCAAATTGCTT TTAGCTTGCGGGATTAATCCTAGTCAATCGGGGTTATTCATTCAAAGTGAAGTGGATGAGCACCCGGCTTTAGCATGGCT ATTAAATTGTCAGGTGTCTATGGGGGAAATGCAAAGAATGACGCAATTCAAAGACAAGTCTTTAAAAAACCCCAAAAGCG TGAATGTGGGGCTTTTCAATTACCCTATTTTGATGGCGTCAGATATTTTATTATACCAAAGCGATTTAGTGCCAGTGGGC GAAGATCAAAAACAGCATTTAGAGCTCACGCGAAACATTGCAGAAAGATTTAACAGGGATTTTGGGAACTGCTTTAAAGT GCCAGAGCCTTTGATCGCTAAAGTGGGGGCAAGGGTTATGGGGCTAGATGATCCAAAAGTGAAGATGAGTAAATCGCATC AAGGGGCTAACCATGCGATTTTTCTTTTAGATGAGCCAGACATTATTGTAAAAAAAATCAAAAAAGCGGCCACTGATTCT ATGGGCGTTATTGCGTTTGATGAAAAAAGAGAGGGCATTTTTAACCTTTTAAATATCTACATGCTTTTAAGCAATGAAAG CCCAGAAAACATAGAAGAACGATTCAAAAATAAGGGCTATGGGGATTTTAAAAAGGAATTGGCTGAAGTGGTGATCCAGG CTTTAAAACCCATTCAAGAAAGATACAAAGAAATCAGCGATGATGAAGTGAAAGCCATTTTAAATCACGGCGTCAAAAAA GCCAGGCCTTTAGCGCAAATGACTTACCAAAAGGCTAAAGAACTAATGGGGTTGGTTTAG
Upstream 100 bases:
>100_bases TTTCAAAACATGGCGTTTGAAAAATTGAGCTATGAAGTGTTACTCTTTTCGGGGATCAAGCGTTCTTAAAAACTAAGATA AATTAAAATATTAAAATTAG
Downstream 100 bases:
>100_bases ATGAAAATTTTAAGTTTATGGTTAGGGGTGTTTTATTTCCTTAAGGCTACGCCTTATTTATACTTGGGCGAAGAGCCTAA ATATAAAGACAATTTCACGC
Product: tryptophanyl-tRNA synthetase
Products: NA
Alternate protein names: Tryptophan--tRNA ligase; TrpRS [H]
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK ARPLAQMTYQKAKELMGLV
Sequences:
>Translated_339_residues MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK ARPLAQMTYQKAKELMGLV >Mature_339_residues MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYELVKLL LACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVG EDQKQHLELTRNIAERFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQERYKEISDDEVKAILNHGVKK ARPLAQMTYQKAKELMGLV
Specific function: Unknown
COG id: COG0180
COG function: function code J; Tryptophanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7710154, Length=328, Percent_Identity=41.7682926829268, Blast_Score=270, Evalue=9e-73, Organism=Homo sapiens, GI41352700, Length=179, Percent_Identity=53.072625698324, Blast_Score=209, Evalue=4e-54, Organism=Escherichia coli, GI1789786, Length=331, Percent_Identity=48.3383685800604, Blast_Score=326, Evalue=2e-90, Organism=Caenorhabditis elegans, GI71982800, Length=337, Percent_Identity=33.8278931750742, Blast_Score=208, Evalue=3e-54, Organism=Caenorhabditis elegans, GI71982793, Length=337, Percent_Identity=33.8278931750742, Blast_Score=207, Evalue=8e-54, Organism=Saccharomyces cerevisiae, GI6320474, Length=346, Percent_Identity=41.0404624277457, Blast_Score=221, Evalue=1e-58, Organism=Drosophila melanogaster, GI24666151, Length=332, Percent_Identity=39.4578313253012, Blast_Score=251, Evalue=7e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002305 - InterPro: IPR014729 - InterPro: IPR002306 [H]
Pfam domain/function: PF00579 tRNA-synt_1b [H]
EC number: =6.1.1.2 [H]
Molecular weight: Translated: 38390; Mature: 38390
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAI CEEEEEECCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCEE TLPIDPAFLKSQSYELVKLLLACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRM EEECCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEHHHCCCCHHHHHHH TQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAERFNRD HHHHHHHCCCCCCCEEEHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC FGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS CCCCCCCCCHHHHHHCCCEECCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQE CCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RYKEISDDEVKAILNHGVKKARPLAQMTYQKAKELMGLV HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVTITLTKTTRNNMHKKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAI CEEEEEECCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCEE TLPIDPAFLKSQSYELVKLLLACGINPSQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRM EEECCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEHHHCCCCHHHHHHH TQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAERFNRD HHHHHHHCCCCCCCEEEHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC FGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDS CCCCCCCCCHHHHHHCCCEECCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC MGVIAFDEKREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVVIQALKPIQE CCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH RYKEISDDEVKAILNHGVKKARPLAQMTYQKAKELMGLV HHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]