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The map label for this gene is yajR [H]

Identifier: 108563545

GI number: 108563545

Start: 1180333

End: 1181664

Strand: Direct

Name: yajR [H]

Synonym: HPAG1_1120

Alternate gene names: 108563545

Gene position: 1180333-1181664 (Clockwise)

Preceding gene: 108563541

Following gene: 108563546

Centisome position: 73.94

GC content: 41.14

Gene sequence:

>1332_bases
ATGTTTAAGAAAATTTTTCCATTAGCGTTAGTGTCGTCGTTGCGGTTTTTAGGGCTTTTTATCGTTTTGCCGGTCATTAG
TTTGTATGCGGATAGTTTCCATTCAAGCAGTCCCTTGCTTATAGGTTTGGCTGTGGGTGGGGCGTATCTCACGCAAATTA
TTTTTCAAACCCCCATGGGCATTCTTAGCGATAAGATAGGCCGTAAAGTGGTCGTTATGGTGTGCTTGTTGTTGTTTTTA
GCTGGATCGTTAGTGTGCTTTATGGCGAATGATATTGTTTGGCTCGTTATCGGGCGCTTCATTCAAGGCATGGGGGCTTT
AGGGGGGGTTGTTAGCGCGATGGTGGCGGATGAAGTGAAAGAAGAAGAGCGTACCAAAGCGATGGCCATCATGGGAGCGT
TTATTTTCATTAGCTTCACTATAAGCATGGCCATAGGCCCTGGGGTTGTGGCGTTTTTTGGGGGGGCAAAATGGCTCTTC
TTGCTCACGGCGATCTTAACTTTATTGAGTTTATTGATGCTTTTAAAAGTCAAAGACGCCCCTAAAATTTCTTACCAGAT
CAAAAACATAAAAGCTTACCAACCCAACTCTAAAGCCTTGTATCTTTTGTATCTAAGCTCTTTTTTTGAAAAAGCGTTCA
TGACGCTTATTTTTGTGCTGATCCCTTTAGCCTTAGTGAATGAATTTCATAAAGATGAAAGTTTTTTGATCTTGGTGTAT
GTGCCTGGAGCCTTATTGGGGGTTTTAAGCATGGGGATAGCGAGCGTTATGGCTGAAAAATACAACAAGCCTAAGGGGGT
GATGCTTTCTGGCGTGCTGTTGTTTATTATGAGTTATGCGTGCTTGTTTTTAGCCGACTCTAGCTTTTTAGGAAAATATT
TATGGCTCTTTATTCTTGGGGTGGCTTTTTTCTTTATTGGCTTTGCCACCTTAGAGCCTATCATGCAATCTTTAGCGTCC
AAATTCGCCAGAGCGCATGAAAAAGGCAAGGTTTTAGGGCAATTCACTACTTTTGGCTATTTGGGGAGCTTTGTTGGGGG
TGTGAGCGGGGGGTTGAGTTATCATCATTTAGGCGTTTCTAACACGAGTTTAATCGTTGTAGCTTTAGGGCTTATTTGGG
GACTATCGCTCTTTTTGCTCCATAACCCTTCCAAGCAAAAAAATGTCTATTTCCCCTTAGACGCTTATAATGAGGAACAA
TTTGAAACTTTAGGGGATAAAATTATTGAATGGTATGTCAATATTAGCGAAGAAATCATTATTGTGAAATATAATTCCGA
TCACATTAGCGAAGAAGAAATCATTCGCTTAGCGCAAAGCTTTAGAAAATAA

Upstream 100 bases:

>100_bases
TTTCTTAAAAATCCATTAAAATTACATTAAACTTTTATTATCAATCCTACTTTCCTAAATTAATGATAGAAATTAGAGAT
TTTCTTGTAAAATACCACGC

Downstream 100 bases:

>100_bases
ACATAATCAAGGATCAAAAATGGCCTATGAAATTTCTAAAAAAGTCTTACACATTGTGGGCAAGACCAACGCCACTTACA
AGCTCATAGAAGAAGGCGAT

Product: multidrug-efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGILSDKIGRKVVVMVCLLLFL
AGSLVCFMANDIVWLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLF
LLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVY
VPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYACLFLADSSFLGKYLWLFILGVAFFFIGFATLEPIMQSLAS
KFARAHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQ
FETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIRLAQSFRK

Sequences:

>Translated_443_residues
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGILSDKIGRKVVVMVCLLLFL
AGSLVCFMANDIVWLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLF
LLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVY
VPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYACLFLADSSFLGKYLWLFILGVAFFFIGFATLEPIMQSLAS
KFARAHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQ
FETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIRLAQSFRK
>Mature_443_residues
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGILSDKIGRKVVVMVCLLLFL
AGSLVCFMANDIVWLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLF
LLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVY
VPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYACLFLADSSFLGKYLWLFILGVAFFFIGFATLEPIMQSLAS
KFARAHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQ
FETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIRLAQSFRK

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=358, Percent_Identity=32.9608938547486, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 48858; Mature: 48858

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHH
ILSDKIGRKVVVMVCLLLFLAGSLVCFMANDIVWLVIGRFIQGMGALGGVVSAMVADEVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
PKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVY
CCCEEEEECEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYACLFLADSSFLGKYLWLFILG
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VAFFFIGFATLEPIMQSLASKFARAHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
NTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNISEEII
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IVKYNSDHISEEEIIRLAQSFRK
EEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHH
ILSDKIGRKVVVMVCLLLFLAGSLVCFMANDIVWLVIGRFIQGMGALGGVVSAMVADEVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
PKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVY
CCCEEEEECEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYACLFLADSSFLGKYLWLFILG
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VAFFFIGFATLEPIMQSLASKFARAHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
NTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNISEEII
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE
IVKYNSDHISEEEIIRLAQSFRK
EEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]