Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563286
Identifier: 108563286
GI number: 108563286
Start: 895752
End: 896483
Strand: Direct
Name: 108563286
Synonym: HPAG1_0861
Alternate gene names: NA
Gene position: 895752-896483 (Clockwise)
Preceding gene: 108563284
Following gene: 108563290
Centisome position: 56.11
GC content: 38.39
Gene sequence:
>732_bases ATGAAAGCAAACACAATCATACTAGTGGATTGGGAGAATTTCAGGCGCGATATTAAACAAACAAAATGCGTTAATTATAA TATTGCTTTAGATGTGATCGTTACTATTAGGGCTTTTTTACTAGATGATGAATGGATCAGTCGTATTTACTTTTATACCA CCCCACCCTTTGATTTTGAACATGCGTTATGGGATAAGAGGAACGACACCCTCCAAAATGAAAAAAATCCGGGAACAGAA ATGAAAATCTTCACGAGCAGCGACATTGAAGAAATCTTACAAAGCAGTGAAGCGACTAAATGGGAGAAGATTTATAGCGA TGTGGAAAATTTCCAACACGATCTGGCTTCATTGGATCAAGTGGAATTGAGGTTGGGGAGGACTAAGTTAAACGCAATAA GAGTGGAGTTTGATGGGAGTTATAGGGCGTTATTAGAACAAAAGCAGGTGGATATGCTCATGGGTCTTGACATTCAAAGG ATAGCCTTTAAAAAAATAGCTGACAGGATTTTGATATTTTCAAAAGATACGGATCTAATCCCTGCACTCAAATTAGCCAG AGATGAGGGGTTAAGGGTGGATATTGCCGATCTGTCTAACAGGCTGTCTCTTCTTAGCCAGGATTTGAAATACAATTCTG ATAAAGTGAGGAAATTGAGCAGCAACGAAGTCAAAGACAAGCTTTTTTCCATCAGAGAAAACCTCACTAAAACCAACTGG GCTTTAAACTAA
Upstream 100 bases:
>100_bases TAAAAAACGCTATTATTATATCCATGTTTCTTGTTAGAATAAAATACAAGATTGCATTAAGAATTTTAAAAAATTTAGCG TATAAATAAGGGAGCAATAA
Downstream 100 bases:
>100_bases ACCCTAAAAAGGGTTATTTCATTTTTATAGAGTTTAAAAAATCATTTTTTAAAAGCTCAATTATTGGCGTTTAATCACAA CGGAGTAATTTTTAAAGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTE MKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQR IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNW ALN
Sequences:
>Translated_243_residues MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTE MKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQR IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNW ALN >Mature_243_residues MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTE MKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQR IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNW ALN
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28443; Mature: 28443
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFE CCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCEEEEEECCCCCHH HALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQ HHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLI HHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCHH PALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNW HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCC ALN CCC >Mature Secondary Structure MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFE CCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCEEEEEECCCCCHH HALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQ HHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLI HHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCHH PALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNW HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCC ALN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA