| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is tdhA [H]
Identifier: 108563284
GI number: 108563284
Start: 892772
End: 895147
Strand: Direct
Name: tdhA [H]
Synonym: HPAG1_0859
Alternate gene names: 108563284
Gene position: 892772-895147 (Clockwise)
Preceding gene: 108563280
Following gene: 108563286
Centisome position: 55.93
GC content: 44.36
Gene sequence:
>2376_bases ATGTTTTTAAGATCATACCCAAAGCTTAGATACGCTTTATGTTTCCCCCTACTCGCTGAGACTTGCTATAGCTCGGATCA CACTCTAGGCAAGGTTACCACCCAAGCTAAAAGGATTTTCACTTACAACAATGAGTTTAAAGTAACTTCTAAAGAACTGG ATCAACGCCAAAGCAATGAAGTCAAAGACTTGTTTAGGACTAACCCTGATGTGAATGTGGGTGGAGGGAGCGTGATGGGG CAGAAAATCTATGTGAGGGGCGTTGAAGACAGGCTTTTAAGGGTTACGGTGGATGGGGCTGCGCAAAATGGCAATATCTA CCACCACCAAGGCAACACCGTGATTGACCCTGGCATGCTCAAAAGCGTGGAAGTTACTAAAGGCGCGGCGAATGCGAGCG CGGGGCCAGGAGCGATTGCAGGAGTGATTAAAATGGAGACTAAAGGAGCGGCTGATTTTATCCCTAGGGGGAAAAATTAT GCGGCTAGTGGGGCGGTGAGTTTTTATACTAATTTTGGGGATAGGGAGACTTTCAGATCGGCTTATCAAAACGCGCATTT TGATATTATCGCTTACTACACGCATCAAAATATTTTCTATTATAGAAGCGGCGCTACAGCGATGAAAAACCTTTTCAATC CCACACAAGCCGATAAAGAGCCAGGAACTCCTAGCGAGCAAAACAACGCTTTGATTAAAATGAATGGTTATTTGAGCGAC AGAGACACGCTCACTTTCAGCTGGAACATGACACGAGATAACGCTACACGCCCTTTAAGGAGTAACGCTATAGGGTTAGC CTATCCTTGTGAAGCCCCCTTTAGCCCTGATGGCGCTCAAGGGTGTCCTAATGTGCTAGATAGTTTCACTAGATACATGT ATCACTCCATTAATAGCGCTAACAATCTTTCCTTACAATACAAAAGGGAAGCGGGAAATTCTTTTGGCGACCCACGATTA GATTTTACCCTTTATACAAGCATCAGGAACGCTCAGTTTGATCCTTTATTTGATCCTAATGGCGTTTATGCTAAATTCCC CACCTCTCAAGCGAGCGCATGGGAAAGAGAAAATTACCCATGCGTTGAAGGCGCTTATTGCACCCCAAGCTTTTCTGATG TGGATAAACCAAGCTCGCAGCCTAGGGATTTGTTTTTAAACAACACCGGCTTAAACCTTAAAGTCGCGCATGTGATTGAT GAAGCCACAGACAGCCTTTTTGAATACGGATTCAACTACCAAAATTTAAGCGTTTTTGACGCTCGTATCCCTAAATCAGA ATTATACAGGCCTAATCAAGTCTATACTGACGATAAAGGGCAAAAACAAATCGCTTGCTCTCTTGTGGACAATAACCCCA ATGACCCTACTTTATGCCAAAGAGGGAAAGCCAATGGGAATATTTATGGAGGCTATGTGCAAGCGAATTACTCGCCCCAT AAAATCATCACTTTTGGAGCCGGGGTAAGATGGGATGCTTACACGCTTTATGATAAGGATTGGAACCACCGCTACACTCA AGGCTTTAGCCCTAGCGCGGCTCTTGTGCTAAGCCCCATTGAGCCTCTATCTTTAAAAATCACTTATTCTCAAGTTACAA GGGGGGTTATGCCAGGAGATGGCGTGTACATGCGCCAAAACGATTTGCGATACGCCAAAAATATCAAGCCTGAAGTGGGC TCTAACGCTGAATTTAATATTGACTATTCAAGCCAGTATTTTAGCGGGAGGGCTGCGGCGTTTTATCAGGCTTTGGATAA TTTCATCTCCCAATACGCGCAAAATTTGATTGTAACCAATTTGAGTCAAGCGATTAGGATTTATGGCTATGAAGTGGGTG GGACTTTTAGATACAAGGGCGTGAGTTTGAATGTAGGGGTCTCGCGCACCTGGCCCACCACCAGGGGGTATTTAATGGCG GATAGCTATGAGCTTGCCGCAAGCACCGGTAATGTTTTTATCATCAAATTGGATTACACCATCCCCAAAACAGGGATCAA TCTTGCATGGCTTAGCCGTTTTGTTACCGGTTTAGATTATTGCGGGTTTGATATTTACTTGCCTGATTATGGGACGGCTG AGAAACCCAAAACCCCTACCGATTTAGCCAAATGCGGATCTAAATTAGGGTTAGTGCATATGCATAAACCGGGCTATGGC GTGAGTAATTTTTATATCAATTGGAGTCCTAAAACCAAAAGCCGTTGGAAAGGTTTGTTACTTTCAGCCGTGTTTAATAA TGTTTTCAACAAATTCTATGTGGATCAAACAAGCCCCTATGTCATGAGCCCGGATATGCCAGGCACTGACGCTGTTAAAA GAGCGATCGCAGAGCCTGGGTTTAACGCGCGTTTTGAAGTGGCTTACAAATGGTAG
Upstream 100 bases:
>100_bases AATAATTATTATACTATTTTATCTCAATGCATTGACGGATTTTGTTTTTTTTTTTTTTGATTTTTATTTTTTGAATTTTT AGATTAAGGAGAGTTGTTGG
Downstream 100 bases:
>100_bases TTAATGGAGCTTTAAGCGTTGTGCATGCGTGATAGCAACGGCTATCGCATCGCTAATATCCAAAGGCTTGATTTCGCTTG TGATGTTAAGCAAGCGCTTG
Product: iron-regulated outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALIKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAQFDPLFDPNGVYAKFPTSQASAWERENYPCVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLSQAIRIYGYEVGGTFRYKGVSLNVGVSRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRAIAEPGFNARFEVAYKW
Sequences:
>Translated_791_residues MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALIKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAQFDPLFDPNGVYAKFPTSQASAWERENYPCVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLSQAIRIYGYEVGGTFRYKGVSLNVGVSRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRAIAEPGFNARFEVAYKW >Mature_791_residues MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALIKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAQFDPLFDPNGVYAKFPTSQASAWERENYPCVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLSQAIRIYGYEVGGTFRYKGVSLNVGVSRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRAIAEPGFNARFEVAYKW
Specific function: Heme receptor [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88381; Mature: 88381
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNE CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCEEEEEEECCCEEEEHHHHHHHHHHH VKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGML HHHHHHCCCCCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCEEEECCCEEECCCCC KSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRS CEEEEECCCCCCCCCCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHH AYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALIKMNGYLSD HHCCCCEEEEEEEEECEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECEECC RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSA CCEEEEEEEECCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC NNLSLQYKREAGNSFGDPRLDFTLYTSIRNAQFDPLFDPNGVYAKFPTSQASAWERENYP CCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHCCCCC CVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVIDEATDSLFEYGFNYQNLSVFD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEE ARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH CCCCHHHCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEEECCCCC KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGD EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHCCCCCCC GVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTN CEEEECCCCHHHHCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LSQAIRIYGYEVGGTFRYKGVSLNVGVSRTWPTTRGYLMADSYELAASTGNVFIIKLDYT HHCEEEEEEEEECCEEEEECEEEECCCCCCCCCCCCEEEECCEEEEECCCCEEEEEEECC IPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYG CCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCC VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRAIAEPG CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHHHHHHCCC FNARFEVAYKW CCCEEEEEEEC >Mature Secondary Structure MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNE CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCEEEEEEECCCEEEEHHHHHHHHHHH VKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGML HHHHHHCCCCCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCEEEECCCEEECCCCC KSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRS CEEEEECCCCCCCCCCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHH AYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALIKMNGYLSD HHCCCCEEEEEEEEECEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECEECC RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSA CCEEEEEEEECCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC NNLSLQYKREAGNSFGDPRLDFTLYTSIRNAQFDPLFDPNGVYAKFPTSQASAWERENYP CCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHCCCCC CVEGAYCTPSFSDVDKPSSQPRDLFLNNTGLNLKVAHVIDEATDSLFEYGFNYQNLSVFD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEE ARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH CCCCHHHCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEEECCCCC KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGD EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHCCCCCCC GVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTN CEEEECCCCHHHHCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LSQAIRIYGYEVGGTFRYKGVSLNVGVSRTWPTTRGYLMADSYELAASTGNVFIIKLDYT HHCEEEEEEEEECCEEEEECEEEECCCCCCCCCCCCEEEECCEEEEECCCCEEEEEEECC IPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYG CCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCC VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRAIAEPG CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHHHHHHCCC FNARFEVAYKW CCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9712775 [H]