Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563259
Identifier: 108563259
GI number: 108563259
Start: 871053
End: 871739
Strand: Direct
Name: 108563259
Synonym: HPAG1_0834
Alternate gene names: NA
Gene position: 871053-871739 (Clockwise)
Preceding gene: 108563252
Following gene: 108563263
Centisome position: 54.56
GC content: 41.63
Gene sequence:
>687_bases ATGGTATTTGACAGAACAATCAGCGTAAGAGAAAAAAAAGCGGCTAAAACGCTTGGGATTATTGGGATCGTCTTTTTTAT TTTGTTTGGCATCGTGATAAGCGGGGTGGCTTTTCAAAAAGAATGGGTGCAACAATTGGATTTATTTTTTATAGACTTGA TCCGCAACCCTGCCCCCATTCAAAAAAGCGCGTGGCTTTCTTTCGTGTTTTTTAGCACATGGTTTGCGCAAAGCAAGCTC ACCACTCCTATAGCCTTACTCATTGGCTTGTGGTTTGGGTTTCAAAAACGCATCGCTTTGGGGGTATGGTTTTTCTTTAG CATCTTATTAGGTGAATTCACCTTAAAATCCCTTAAGCTTTTAGTGGCGCGCCCACGGCCTGTAACCAATGGCGAATTGG TTTTCGCGCATGGCTTTAGTTTCCCCAGCGGGCATGCTTTGGCTTCAGCGCTTTTTTATGGCTCTTTGGCGTTGTTGTTA TGCTATTCTAACGCAAATGCTCGCATTAAAACTATTGGCGCTATTATTTTACTTTTTTGGATTGTTTTAATGTCGTATGA TAGGGTTTATTTAGGGGTGCATTACCCTAGCGATGTTTTAGGAGGGTTTTTATTAGGGATTGCTTGGTCGTGCTGTTCTT TAGCGCTTTATTTAGGGTTTTTGAAACGCCCTTATAAAGCCGCTTAA
Upstream 100 bases:
>100_bases AAAAGAATATTATTTTTTTATTCCTTGCGTTTTCTGTGTGTTTGTGGGGTAAATAAGATATAATCGCCTTTTTAAAATTC ATTTTTTAAAAGGGGTTTGA
Downstream 100 bases:
>100_bases AGCGTTTTTTAAAATCTCATTTTTAAAAAGAAAGCGATGGGTTAGGGTATAACTCCTCTTTCTTTTTAATCTCATCAAAT TCATCTTTATAGCGGTGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Associated Phospholipid Phosphatase; Phosphoesterase PA-Phosphatase Related Protein; PAP2 Family Protein; Integral Membrane Protein; Phosphoesterase PA-Phosphatase-Like Protein; Type 2 Phosphatidic Acid Phosphatase Family Protein; Phosphatidylglycerophosphatase B; Phosphoesterase; PA-Phosphatase-Like Phosphoesterase; PAP2 Superfamily; Phosphatase PAP2-Like Family; Phosphatidylglycerophosphatase B-Related Protein; Phospholipid Phosphatase; PAP2 Domain-Containing Protein; Phosphatidylglycerophosphatase; Transmembrane Acid Phosphatase; Type 2 Phosphatidic Acid Phosphatase; PAP2 Superfamily Protein; PAP2 Superfamily Membrane Protein; Membrane-Associated Phosphatase; Acid Phosphatase Family Protein; Phosphatidylglycerophosphatase B Homolog; Transmembrane Acid Phosphatase Protein
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MVFDRTISVREKKAAKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPIQKSAWLSFVFFSTWFAQSKL TTPIALLIGLWFGFQKRIALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGELVFAHGFSFPSGHALASALFYGSLALLL CYSNANARIKTIGAIILLFWIVLMSYDRVYLGVHYPSDVLGGFLLGIAWSCCSLALYLGFLKRPYKAA
Sequences:
>Translated_228_residues MVFDRTISVREKKAAKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPIQKSAWLSFVFFSTWFAQSKL TTPIALLIGLWFGFQKRIALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGELVFAHGFSFPSGHALASALFYGSLALLL CYSNANARIKTIGAIILLFWIVLMSYDRVYLGVHYPSDVLGGFLLGIAWSCCSLALYLGFLKRPYKAA >Mature_228_residues MVFDRTISVREKKAAKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPIQKSAWLSFVFFSTWFAQSKL TTPIALLIGLWFGFQKRIALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGELVFAHGFSFPSGHALASALFYGSLALLL CYSNANARIKTIGAIILLFWIVLMSYDRVYLGVHYPSDVLGGFLLGIAWSCCSLALYLGFLKRPYKAA
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25537; Mature: 25537
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFDRTISVREKKAAKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC QKSAWLSFVFFSTWFAQSKLTTPIALLIGLWFGFQKRIALGVWFFFSILLGEFTLKSLKL CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVARPRPVTNGELVFAHGFSFPSGHALASALFYGSLALLLCYSNANARIKTIGAIILLFW HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH IVLMSYDRVYLGVHYPSDVLGGFLLGIAWSCCSLALYLGFLKRPYKAA HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVFDRTISVREKKAAKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC QKSAWLSFVFFSTWFAQSKLTTPIALLIGLWFGFQKRIALGVWFFFSILLGEFTLKSLKL CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVARPRPVTNGELVFAHGFSFPSGHALASALFYGSLALLLCYSNANARIKTIGAIILLFW HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH IVLMSYDRVYLGVHYPSDVLGGFLLGIAWSCCSLALYLGFLKRPYKAA HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA