Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563192
Identifier: 108563192
GI number: 108563192
Start: 803088
End: 804377
Strand: Direct
Name: 108563192
Synonym: HPAG1_0767
Alternate gene names: NA
Gene position: 803088-804377 (Clockwise)
Preceding gene: 108563191
Following gene: 108563193
Centisome position: 50.31
GC content: 37.52
Gene sequence:
>1290_bases ATGCCATACGCCTTAAGAAAAAGATTTTTCAAACGCTTTGCGCTGATTGTTTCCACTTTTTGTGCGATAAGCTTGAACGC TAAAAGCTATCTGTTTTCCCCACTGCCCCCAGCGCACCAACAAATCATTAAGACAGAGCCTTGCTCTTTGGAATGCTTGA AAGACTTGATGCTGCAAAATCAAATCTTTTCTTTTGTGTCTCAATACGATAACAACAACCAAGATGAGAGCCTTAAAACT TATTATCATGACATACTCAATAAACTCAACCCTGCATTCATCGCTTCTCAAACTCCAGCTAAAGAAAGCTATGAGCCTAA GATTGAATTAGCGGTTTTACTGCCTAAAAAAATCGTTGGGCGTTATGCCATTTCGGTGATGAACACCCTTTTAGCGTATT TGAACACCAGAAACAACGATTTCAATATCCAAGTCTTTGACAGCGATGAAGAAAGCCCTGAAAAATTAGAGCAAACCTAT AAAGAAATTGAAAAAGAAAAATTCCCTTTTGTGATAGCTTTATTGACTAAAGAGGGCGTGGAAAATTTGCTCCAAAACAC GACCATTAGCACCCCTACTTATGTGCCTACGGTGAATAGAGCGCAATTAGAAAATCAAACTGAGCGTTCTTTAAGCGAAC GCTTGTATTTTGGGGGGATTGATTATAAAGAGCAATTAGGCATGCTCGCAACTTTCATTAACCCTAATTCGCCCGTGATT GAATACGATGATGATGGCCTAATAGGTGAACGCTTGAGGCAAATCACGGAGTCTTTAAGCATTGAAGTCAAACACCAAGA AAATATTTCTTACAAGCAAGCCACCAGTTTTTCTAAAAATTTTAGAAAAAACGATGCGTTTTTTAAAAATTCTATTTTGA TTTTAAACACCCCTACCACTAAAAGCGGTCTGATCCTTTCTCAAATAGGGCTTTTAGAATATAAGCCCTTTAAAATCCTT TCCACACAAATCAATTTCAACCCCTCTTTACTCTTACTCACCCAGCCTAAAGACAGAAAAGATTTATTCATTGTCAATGC CTTACAAAATAGCGATGAAACGCTGATAGAATACGCTTCCTTATTGGAGAGCGATTTAAGGCATGATTGGGTGAATTATT CTAGTGCAATCGGGCTAGAGGTGTTTTTAAACACGCTAGATCCGCATTTTAAAAAGTCTTTTCAAGAGAGTTTAGAAGAC AATCAAGTCCGTTACCACAATCAAATTTATCAGGCTTTAGGGTATTCTTTTGAGCCGATAAAAAATGAAAGCGGAACAAA AAAAGAATAA
Upstream 100 bases:
>100_bases CCTCTTGTTGGGTTGTAGGGGTAAAATCAGTCCCCTTGTTAGGGTTAATTATTCTATAATAATAAAATTTTAGGAAATTC AGTTTAAAAGATATTAAAAA
Downstream 100 bases:
>100_bases TATTTAGATAATTATTTGAATACTTTCATTTTTAATCGGTTTTTAATAAAATTGGAATATGATACGAGCGAAAATTAAAC AAAGGTTATTCTGTGTTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQNQIFSFVSQYDNNNQDESLKT YYHDILNKLNPAFIASQTPAKESYEPKIELAVLLPKKIVGRYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTY KEIEKEKFPFVIALLTKEGVENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLGMLATFINPNSPVI EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTTKSGLILSQIGLLEYKPFKIL STQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYASLLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQESLED NQVRYHNQIYQALGYSFEPIKNESGTKKE
Sequences:
>Translated_429_residues MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQNQIFSFVSQYDNNNQDESLKT YYHDILNKLNPAFIASQTPAKESYEPKIELAVLLPKKIVGRYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTY KEIEKEKFPFVIALLTKEGVENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLGMLATFINPNSPVI EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTTKSGLILSQIGLLEYKPFKIL STQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYASLLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQESLED NQVRYHNQIYQALGYSFEPIKNESGTKKE >Mature_428_residues PYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQNQIFSFVSQYDNNNQDESLKTY YHDILNKLNPAFIASQTPAKESYEPKIELAVLLPKKIVGRYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYK EIEKEKFPFVIALLTKEGVENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLGMLATFINPNSPVIE YDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTTKSGLILSQIGLLEYKPFKILS TQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYASLLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQESLEDN QVRYHNQIYQALGYSFEPIKNESGTKKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49409; Mature: 49278
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN CCHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH QIFSFVSQYDNNNQDESLKTYYHDILNKLNPAFIASQTPAKESYEPKIELAVLLPKKIVG HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECHHHHHH RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHH ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLGMLATFINPNSPVI HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHEEECCCCCEE EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT EECCCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCEEEEECCCC KSGLILSQIGLLEYKPFKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS CCCHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHH LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQESLEDNQVRYHNQIYQALGYSFEPI HHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC KNESGTKKE CCCCCCCCC >Mature Secondary Structure PYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN CHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH QIFSFVSQYDNNNQDESLKTYYHDILNKLNPAFIASQTPAKESYEPKIELAVLLPKKIVG HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECHHHHHH RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHH ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLGMLATFINPNSPVI HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHEEECCCCCEE EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT EECCCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCEEEEECCCC KSGLILSQIGLLEYKPFKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS CCCHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHH LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQESLEDNQVRYHNQIYQALGYSFEPI HHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC KNESGTKKE CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA