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The map label for this gene is yebA [C]

Identifier: 108562905

GI number: 108562905

Start: 497716

End: 498927

Strand: Direct

Name: yebA [C]

Synonym: HPAG1_0480

Alternate gene names: 108562905

Gene position: 497716-498927 (Clockwise)

Preceding gene: 108562904

Following gene: 108562906

Centisome position: 31.18

GC content: 38.78

Gene sequence:

>1212_bases
ATGGTATTTTTTCATAAGAAAATTATTTTAAATTTTATCTATTCTTTAATGGTTGCTTTTTTATTCAATGGGGTTCTTTT
AAAAGCCGATGAAATGGCTAAAAAGCAAACTCTTTTGGTGGGTGAAAGGCTTGTGTGGGATAAACTCACGCTGTTAGGGT
TTTTAGAAAAAAACCATATCCCTCAAAAACTCTACTACAATTTGAGCTCTCAAGATAAAGAATTGAGCGCTGAAATCCAA
AGCAATGTTACCTATTACACTTTAAGAGATGAAAACAACACGCTCATTCAAGCCCTTATCCCTATAAGCCAGGATTTGCA
AATCCATATTTATAAAAAAGGGGAGGATTATTTTTTAGACTTTATCCCCATTATTTTCACTCGTAAAGAAAAAACCCTCC
TTCTTTCTTTACAAACTTCGCCCTATCAAGATATTGTCAAAGCCACCAATGACCCCCTTTTAGCCAACCAATTGATGAAC
GCGTATAAAAAAAGCGTGCCTTTTAAACGCTTGGCAAAAAACGATAAAATCGCTATCGTTTATACAAGAGATTATCGTGT
GGGGCAAGCGTTTGGCCAGCCGACTATTAAAATAGCCATGATTAGCTCTCGTTTGCACCAATACTATCTCTTTTCCCATT
CAAACGGGCGTTATTACGATTCAAAAGCGCAAGAAGTGGCAGGGTTTTTACTAGAAACCCCGGTGAAATACACCCGCATT
TCTTCGCCTTTTTCTTATGGGAGGTTCCATCCTGTCTTAAAAGTCAAACGGCCTCATTACGGCGTGGATTATGCGGCTAA
ACATGGCAGTTTGATCCATTCTGCTTCAGATGGCCGTGTGGGTTTTATAGGGGTTAAGGTGGGGTATGGGAATGTGGTTG
AAATCCATTTGAATGAATTGCGCTTGGTGTATGCTCACATGAGCGCGTTCGCTAAGGGGTTGAAAAAAGGATCGTTCGTT
AAAAAAGGGCAAATCATAGGAAGAGTGGGAAGCACCGGTTTAAGCACCGGGCCGCATTTGCATTTTGGCGTGTATAAAAA
CTCCCGCCCGATTAATCCTTTAGGCTATATCCGCACCGCTAAAAGCAAATTACACGGCAAGCAAAGAGAGATTTTTTTAG
AAAAAGCTCAGCATTCTAAGCAAAAATTAGAAGAACTTTTGAAAACCCATTCTTTTGAAAAAAATTCATTTTATCTTTTA
GAGGGTTTTTAA

Upstream 100 bases:

>100_bases
TATAAAAACAAGGTTAGGCTTTAAACTTGTATCGTTTTTCTTTAATGGCTTATGTTATACTAATAAAATACAGATTCAAT
TGAAGGCATTAAACGACTGC

Downstream 100 bases:

>100_bases
TGTCTTATTTTAAGAATGCTTTCAACCAAAAATCTTTAGTGGATGATTCCAGTGTGTATTTAGAGCCTTGTTCTAGCTCT
AATTTCATAGAATTAAAACG

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MVFFHKKIILNFIYSLMVAFLFNGVLLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQ
SNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMN
AYKKSVPFKRLAKNDKIAIVYTRDYRVGQAFGQPTIKIAMISSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRI
SSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNELRLVYAHMSAFAKGLKKGSFV
KKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREIFLEKAQHSKQKLEELLKTHSFEKNSFYLL
EGF

Sequences:

>Translated_403_residues
MVFFHKKIILNFIYSLMVAFLFNGVLLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQ
SNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMN
AYKKSVPFKRLAKNDKIAIVYTRDYRVGQAFGQPTIKIAMISSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRI
SSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNELRLVYAHMSAFAKGLKKGSFV
KKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREIFLEKAQHSKQKLEELLKTHSFEKNSFYLL
EGF
>Mature_403_residues
MVFFHKKIILNFIYSLMVAFLFNGVLLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQ
SNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMN
AYKKSVPFKRLAKNDKIAIVYTRDYRVGQAFGQPTIKIAMISSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRI
SSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNELRLVYAHMSAFAKGLKKGSFV
KKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREIFLEKAQHSKQKLEELLKTHSFEKNSFYLL
EGF

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=223, Percent_Identity=32.2869955156951, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 46138; Mature: 46138

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFFHKKIILNFIYSLMVAFLFNGVLLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHI
CEEEHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PQKLYYNLSSQDKELSAEIQSNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLD
CHHEEECCCCCCHHHHHHHHCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCEEEE
FIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLAKNDKIAIV
EEEEEEECCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEE
YTRDYRVGQAFGQPTIKIAMISSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRI
EECCCEEHHHCCCCCEEEEEEHHHHEEEEEEECCCCCEECCHHHHHHHHHHHCCCHHEEE
SSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNEL
CCCCCCCCCCCEEEECCCCCCCCHHHCCCCEEECCCCCEEEEEEEEECCCCEEEEEECHH
RLVYAHMSAFAKGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA
HHHHHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
KSKLHGKQREIFLEKAQHSKQKLEELLKTHSFEKNSFYLLEGF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MVFFHKKIILNFIYSLMVAFLFNGVLLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHI
CEEEHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
PQKLYYNLSSQDKELSAEIQSNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLD
CHHEEECCCCCCHHHHHHHHCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCEEEE
FIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLAKNDKIAIV
EEEEEEECCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEE
YTRDYRVGQAFGQPTIKIAMISSRLHQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRI
EECCCEEHHHCCCCCEEEEEEHHHHEEEEEEECCCCCEECCHHHHHHHHHHHCCCHHEEE
SSPFSYGRFHPVLKVKRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNEL
CCCCCCCCCCCEEEECCCCCCCCHHHCCCCEEECCCCCEEEEEEEEECCCCEEEEEECHH
RLVYAHMSAFAKGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTA
HHHHHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
KSKLHGKQREIFLEKAQHSKQKLEELLKTHSFEKNSFYLLEGF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]