Click here to switch to the map view.

The map label for this gene is 108562888

Identifier: 108562888

GI number: 108562888

Start: 476860

End: 478272

Strand: Direct

Name: 108562888

Synonym: HPAG1_0463

Alternate gene names: NA

Gene position: 476860-478272 (Clockwise)

Preceding gene: 108562887

Following gene: 108562889

Centisome position: 29.87

GC content: 39.99

Gene sequence:

>1413_bases
TTGGGAGTTAGGGTTTTGGAAATTAAGAAATATTTTTCTTACTCTCTATTTTTTTTGCTTTTTTCTAGTCTTTTTTTATC
CAAACTTCAAGCTTATAAATTCAACATGAGCATTGTTGGAAAGGTGAGCAGCTATACCAAGTTTGGCTTTAACAACCAAA
GATACCAGCCTTCTAAAGACATTTATCCTACAGGTAGCTACACTTCTTTACTCGGCGAATTGAATTTGAGCATGGGTTTA
TACAAGGGTTTGAGAGCGGAAGTGGGGGCGATGATGGCAGCACTCCCCTATGACTCTACCGCTTATCAAGGCAACAATAT
CCCTAACGGCCAGCCTGGCTCTAGGACCGATCCTTTTGGGGCGGGTATCTTTTGGCAATATATTGGTTGGTATGCAGGGC
ATAGCGGTTTAAACGTGCAAAAACCTCGTTTAGCCATGGTGCATAACGCTTTTTTGAGCTACAACTACAAAAAAGACAAA
TTCAGTTTTGGCGTGAAAGGGGGTCGCTATGATGCTGAAGAGTATGATTGGTTCACTTCTTACACTCAAGGGGTTGAAGG
CTTTGTCAAATACAAAGACACCAGATTCAGAGTGATGTATTCAGACGCTAGGGCTTCAGCGTCAAGCGACTGGTTTTGGT
ATTTTGGGCGTTACTATACAAGCGGTAAGGCTCTAATGGTAGCTGATTTGAAATATGAAAAAGACAACCTAAAAATCAAC
CCTTATTTTTATGCGATCTTTCAAAGAATGTATGCGCCAGGCATTAATATCACTTATGACACCAACCCCAATTTCAACAA
TAAGGGCTTTCGTTTTGTAGGCACTTTCGTGGGTTTTTTCCCCATTTTTGCCACTCCGGCTAATCAAAATGATATTATCC
TCTTCCAACAAGTGCCGTTAGGCAAGAGCGGGCAAACTTATTTCTTCCGCACCCGTTTTTACTATAATAAGTGGCAATTT
GGGGGCAGTGTCTATAAAAATATCGGTAACGCTAATGGTGATATAGGCATTTATGGCGACCCTTTGGGGTATAACATTTG
GACGAATAGTATTTATGACGCAGAAATTAACAATATTGTTGGCGCTGATGTTATTAACGGGTTTTTATATGTAGGCTCAC
AATATAGAGGGTTTAGTTGGAAAATTTTAGGCCGTTGGACGGATAGCCCAAGGGCTGATGAAAGGAGTCTCGCGCTCTTT
TTGAGTTATTTTTCTAATAAGTATAATATTAGAATGGATTTAAAACTAGAATATTATGGCAATATCACCAAAAAAGGCTA
TTGTATTGGGTATTGTGGCATGTATGTTCCAGTCGATCCTAACGGGCCTGGGACACAGCCTTTAACGCACAATGTGTATT
CTGACCGAAGCCATATCATGTTTAACATCACTTATGGTTTTAGAATTTACTAG

Upstream 100 bases:

>100_bases
AGACAGAAGCCATTTGATGACACATATCAGTTATAGTTTCTAAGAGAGTTCTCCCCCTATCTCTTAGATATGCCTTTTTT
GTATTTTTATTTTAATATCT

Downstream 100 bases:

>100_bases
TATTTTATCCTTAATGGATATTTTTGATTAGCCTTTTTAAAATATTAAAAGGCTCTGCTCCAATCAAATATCAATACTCA
AAAAGCCTTATTTAATTTTA

Product: outer membrane protein HofD

Products: NA

Alternate protein names: Outer Membrane Protein; Hof Family Outer Membrane Protein; Outer Membrane Protein HofH; Outermembrane Protein HofE; Outer Membrane Protein HofF; Outer Membrane Protein HofA; Outer Membrane Protein HofC; Outer Membrane Protein HofB; Outer Membrane Protein HofD

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGL
YKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDK
FSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKIN
PYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQF
GGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALF
LSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY

Sequences:

>Translated_470_residues
MGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGL
YKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDK
FSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKIN
PYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQF
GGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALF
LSYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY
>Mature_469_residues
GVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMGLY
KGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKF
SFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKINP
YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFG
GSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFL
SYFSNKYNIRMDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54046; Mature: 53915

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKD
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEEECCHHEECCCCCCCCCCCCC
IYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCC
AGIFWQYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTS
CCHHHHHHHHHCCCCCCCCCCCHHHHEEHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHH
YTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKIN
HHHCCCEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEEC
PYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPL
HHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHEECCCCCCCEEEEEECCC
GKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIV
CCCCCEEEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCEEECCCEEECHHCCCC
GADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYG
CHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEC
NITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY
CCCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure 
GVRVLEIKKYFSYSLFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKD
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEEECCHHEECCCCCCCCCCCCC
IYPTGSYTSLLGELNLSMGLYKGLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCC
AGIFWQYIGWYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTS
CCHHHHHHHHHCCCCCCCCCCCHHHHEEHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHH
YTQGVEGFVKYKDTRFRVMYSDARASASSDWFWYFGRYYTSGKALMVADLKYEKDNLKIN
HHHCCCEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEEC
PYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPL
HHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHEECCCCCCCEEEEEECCC
GKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIV
CCCCCEEEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCEEECCCEEECHHCCCC
GADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYG
CHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEC
NITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGFRIY
CCCCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA