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The map label for this gene is 108562887

Identifier: 108562887

GI number: 108562887

Start: 475216

End: 476802

Strand: Direct

Name: 108562887

Synonym: HPAG1_0462

Alternate gene names: NA

Gene position: 475216-476802 (Clockwise)

Preceding gene: 108562885

Following gene: 108562888

Centisome position: 29.77

GC content: 44.68

Gene sequence:

>1587_bases
ATGAAATTAAAGAAACGAAAAGTTGCGGCTACATTGCTAAAGCGTTTTACCTTACCACTATTGTTCACTACGGGTTCATT
AGGGGCGGTTACTTATGAAGTGCATGGGGATTTTATCAACTTCTCCAAAGTGGGTTTTAACCATTCGCCTATTAACCCTG
TTAAAGGTATCTATCCCACAGAAACTTTTGTTAACCTTACGGGTAAGCTAGAGGGGTCTGTTCATTTAGGTAGGGGATGG
ACCGTGAATTTAGGCGGTGTTTTGGGCGGACAGGTTTATGATAGCACTAGGTATGATAGGTGGGCGAAGGATTTTACCCC
CCCAAGCTATTGGGATAAAACTTCTTGCGGCACTGATTCTTTGAGCCTTTGTATGAACGCCACTAAAATGTGGGAGCAAC
AAGGGCCAGGCGGTATTATTGACCCTAGAGGTATTGGCTATATGTATATGGGTGAGTGGAACGGCTTGTTCCCTAACTAC
TATCCGGCTAACGCCTACTTGCCTGGGCATTCAAGGCGTTATGAAGTTTATAAAGCGAATCTGACCTATGATAGCGACAG
AGTCCATATGGTCATGGGGCGCTTTGATGTTACTGAGCAGGAGCAAATGGATTGGGTTTACCAATTGTTCCAAGGGTTTT
ATGGGACTTTCAAGCTCACTAAGAACATGAAATTCTTGCTCTTTAGCTCTTGGGGTCGTGGTATCGCTGATGGTCAGTGG
TTGTTCCCTATCTATCGTGAAAAGCCTTGGGGTATTCATAAAGCGGGTATCATTTATCGCCCTACAAAGAATTTAATGAT
CCACCCTTATGTGTATCTTATCCCAATGGTAGGTACATTGCCCGGTGCTAAAATAGAGTATGATACCAATCCTGAATTTA
GCGGTAGGGGTATTAGGAACAGAACGACTTTCTATGCGTTGTATGACTATCGTTGGAATAACGCTGAATACGGTCGTTAC
GCACCCGCTCGTTATAACACTTGGGATCCGTTCTTGGATAATGGTAAGTGGCGTGGCTTGCAAGGCCCTGGTGGTGCAAC
ACTCCTTTTGCGCCACCACATAGATATTAACAACTACTTTGTGGTTGGTGGTGCTTATCTCAACATTGGTAACCCTAACA
TGAACTTAGGTACTTGGGGTAACCCTGTGGCTGTTGATGGTATCGAACAATGGGTCGGTGGCATCTACAGCTTAGGGTTT
GCGGGGATTGACAACATTACCGATGCTGACGCGTTCACCGAGTATGTTAAAGGTGGAGGCAAGCATGGTAAGTTCAGTTG
GAGCGTTTATCAGCGCTTCACTACCGCTCCAAGGGCTTTGGAATATGGTATCGGTATGTATCTAGACTATCAGTTCAGTA
AGCATGTTAAAGCGGGTCTCAAACTCGTATGGTTAGAGTTCCAAATCCGTGCGGGTTACAACCCTGGAACCGGTTTCCTT
GGGCCAAACGGTCAGCCGCTTAACTTGAATAATGGTTTGTTTGAATCTTCTGCATTCGCACAAGGTCCTCAAGACATAGG
TGGCATTAAAAAGAGTATTACCCAAGACAGAAGCCATTTGATGACACATATCAGTTATAGTTTCTAA

Upstream 100 bases:

>100_bases
AGAAAAATTAGCTTGATTTTAAACTAATTCTATATTCTTTTATGCTACAATTACTTCTACAGAGTAATTTATCTATTCTC
AGGTAAAGTAAGGAAGAGGA

Downstream 100 bases:

>100_bases
GAGAGTTCTCCCCCTATCTCTTAGATATGCCTTTTTTGTATTTTTATTTTAATATCTTTGGGAGTTAGGGTTTTGGAAAT
TAAGAAATATTTTTCTTACT

Product: outer membrane protein HofC

Products: NA

Alternate protein names: Outer Membrane Protein; Hof Family Outer Membrane Protein; Outer Membrane Protein HofH; Outermembrane Protein HofE; Outer Membrane Protein HofF; Outer Membrane Protein HofA; Outer Membrane Protein HofC; Outer Membrane Protein HofB; Outer Membrane Protein HofD

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MKLKKRKVAATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKVGFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGW
TVNLGGVLGGQVYDSTRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWEQQGPGGIIDPRGIGYMYMGEWNGLFPNY
YPANAYLPGHSRRYEVYKANLTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQW
LFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTTFYALYDYRWNNAEYGRY
APARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGGIYSLGF
AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFL
GPNGQPLNLNNGLFESSAFAQGPQDIGGIKKSITQDRSHLMTHISYSF

Sequences:

>Translated_528_residues
MKLKKRKVAATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKVGFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGW
TVNLGGVLGGQVYDSTRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWEQQGPGGIIDPRGIGYMYMGEWNGLFPNY
YPANAYLPGHSRRYEVYKANLTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQW
LFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTTFYALYDYRWNNAEYGRY
APARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGGIYSLGF
AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFL
GPNGQPLNLNNGLFESSAFAQGPQDIGGIKKSITQDRSHLMTHISYSF
>Mature_528_residues
MKLKKRKVAATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKVGFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGW
TVNLGGVLGGQVYDSTRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWEQQGPGGIIDPRGIGYMYMGEWNGLFPNY
YPANAYLPGHSRRYEVYKANLTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQW
LFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTTFYALYDYRWNNAEYGRY
APARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGGIYSLGF
AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFL
GPNGQPLNLNNGLFESSAFAQGPQDIGGIKKSITQDRSHLMTHISYSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59688; Mature: 59688

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKKRKVAATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKVGFNHSPINPVKGIYPT
CCCCHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
ETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQVYDSTRYDRWAKDFTPPSYWDKTSCGTDS
CEEEEEEEEECCCEEECCCEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCH
LSLCMNATKMWEQQGPGGIIDPRGIGYMYMGEWNGLFPNYYPANAYLPGHSRRYEVYKAN
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
LTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQW
EEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCCCCEE
LFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRN
EEEEECCCCCCEECCCEEECCCCCCEECCHHEEEEHHHCCCCCEEEECCCCCCCCCCCCC
RTTFYALYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYF
CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEECCCCEE
VVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGGIYSLGFAGIDNITDADAFTEYVKGGG
EEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
KHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFL
CCCCEEHHHHHHHHCCCHHHHHCCCEEEEECHHHHHHCCEEEEEEEEEEEECCCCCCCCC
GPNGQPLNLNNGLFESSAFAQGPQDIGGIKKSITQDRSHLMTHISYSF
CCCCCEECCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLKKRKVAATLLKRFTLPLLFTTGSLGAVTYEVHGDFINFSKVGFNHSPINPVKGIYPT
CCCCHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
ETFVNLTGKLEGSVHLGRGWTVNLGGVLGGQVYDSTRYDRWAKDFTPPSYWDKTSCGTDS
CEEEEEEEEECCCEEECCCEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCH
LSLCMNATKMWEQQGPGGIIDPRGIGYMYMGEWNGLFPNYYPANAYLPGHSRRYEVYKAN
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
LTYDSDRVHMVMGRFDVTEQEQMDWVYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQW
EEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCCCCEE
LFPIYREKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRN
EEEEECCCCCCEECCCEEECCCCCCEECCHHEEEEHHHCCCCCEEEECCCCCCCCCCCCC
RTTFYALYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYF
CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEECCCCEE
VVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGGIYSLGFAGIDNITDADAFTEYVKGGG
EEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
KHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFL
CCCCEEHHHHHHHHCCCHHHHHCCCEEEEECHHHHHHCCEEEEEEEEEEEECCCCCCCCC
GPNGQPLNLNNGLFESSAFAQGPQDIGGIKKSITQDRSHLMTHISYSF
CCCCCEECCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA