Click here to switch to the map view.

The map label for this gene is rimP [H]

Identifier: 108562826

GI number: 108562826

Start: 409798

End: 410238

Strand: Direct

Name: rimP [H]

Synonym: HPAG1_0401

Alternate gene names: 108562826

Gene position: 409798-410238 (Clockwise)

Preceding gene: 108562825

Following gene: 108562828

Centisome position: 25.67

GC content: 37.87

Gene sequence:

>441_bases
ATGACTAAAAAAATAGAAGAGAAAATAGAGGGCGTGATTGAAAGCTTGGGTTATTTGCTTTATGATGTGAGTTTGGTTAA
AGAAAATGAGCAGCATGTTTTAAGGGTGAGCCTTAAAAACCCTAATGGAGCGGTTAGTTTGGACATTTGCCAACAAGTGA
GCGAGGTAATTTCGCCCTTATTAGATGTGTGCGATTTTATTCAAGACGCTTATATTTTGGAAGTGAGTTCTATGGGGTTA
GAAAGAACGCTTAAAACCCCCAAACATTTCAAGCTTTCTTTAGGCGAAAAAGTGGAGGTCAAACTCATCAATAAAGAAAG
CTTTCAAGCCGTCCTTAAAGACGCTAACGATTTGAGTGCGGATTTTGAATTAGAGGATCACGCTATCAAAAGCGTGGGGT
ATAAAGATTTAAAGAAAGTTAAAACGCTTTTTGAGTGGTGA

Upstream 100 bases:

>100_bases
TGGTTTAAATGCCCAAAACTCAGTTTTGTTTCAGACAATAGCTTAGAAAAGCAGCTCCGATTAGACGCCATATTTAATGA
AATCGCTAAAGGGAGAGATA

Downstream 100 bases:

>100_bases
AATAATGCGAAGCGGTAGCGTTTCCTACACTTTATGAGAAATTACCGCTTGATTGAAATTGGCTCTTGTTATTTGGCTAA
AAAACGCCAAAAAGCATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVCDFIQDAYILEVSSMGL
ERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSADFELEDHAIKSVGYKDLKKVKTLFEW

Sequences:

>Translated_146_residues
MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVCDFIQDAYILEVSSMGL
ERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSADFELEDHAIKSVGYKDLKKVKTLFEW
>Mature_145_residues
TKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVCDFIQDAYILEVSSMGLE
RTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSADFELEDHAIKSVGYKDLKKVKTLFEW

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=115, Percent_Identity=35.6521739130435, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 16541; Mature: 16410

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHH
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCEEEEEEECHHHHHHHHHCCCCCCC
DFELEDHAIKSVGYKDLKKVKTLFEW
CCCHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHH
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCEEEEEEECHHHHHHHHHCCCCCCC
DFELEDHAIKSVGYKDLKKVKTLFEW
CCCHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA