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The map label for this gene is rbfA [H]

Identifier: 108562825

GI number: 108562825

Start: 409470

End: 409805

Strand: Direct

Name: rbfA [H]

Synonym: HPAG1_0400

Alternate gene names: 108562825

Gene position: 409470-409805 (Clockwise)

Preceding gene: 108562824

Following gene: 108562826

Centisome position: 25.65

GC content: 39.58

Gene sequence:

>336_bases
ATGAACGCTCATAAAGAACGCTTAGAATCCAATCTTTTAGAATTACTGCAAGAAGCTTTAGCGGGCTTGAACGACAGCGA
GTTGAATTCTTTAAGCGTTACTAAAGTGGAATGCTCTAAAGGGAAACACCACGCTTTGGTGTTTGTGCTTTCATCAGATC
ATAAAATCCTTTCTAAATTGAAAAAAGCTGAGGGTCTTATCAGGCAGTTTGTCTTGCAGGCGAGCGGGTGGTTTAAATGC
CCAAAACTCAGTTTTGTTTCAGACAATAGCTTAGAAAAGCAGCTCCGATTAGACGCCATATTTAATGAAATCGCTAAAGG
GAGAGATAATGACTAA

Upstream 100 bases:

>100_bases
AGGGCTATGAGTGCGGGATCATGCTAGACAATTATAACGAGATTAAAGTGGGCGATGTGTTTGAAACCTATAAAGAAATC
CATAAAAAAAGAACCCTCTA

Downstream 100 bases:

>100_bases
AAAAATAGAAGAGAAAATAGAGGGCGTGATTGAAAGCTTGGGTTATTTGCTTTATGATGTGAGTTTGGTTAAAGAAAATG
AGCAGCATGTTTTAAGGGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGRDND

Sequences:

>Translated_111_residues
MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGRDND
>Mature_111_residues
MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVSDNSLEKQLRLDAIFNEIAKGRDND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12447; Mature: 12447

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAKGRDND
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAHKERLESNLLELLQEALAGLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAKGRDND
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA