Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562701
Identifier: 108562701
GI number: 108562701
Start: 280201
End: 280602
Strand: Direct
Name: 108562701
Synonym: HPAG1_0276
Alternate gene names: NA
Gene position: 280201-280602 (Clockwise)
Preceding gene: 108562700
Following gene: 108562702
Centisome position: 17.55
GC content: 38.06
Gene sequence:
>402_bases TTGATGCAAGGTTTTGATTTTAGTTTTAATCCTAAGGCATGCGAGGGTTGTGGGGCAAAGTGTTGCGTAGGGGAAAGCGG GTATATTTTTTTGAATATCCAAGAAATGCAAAAAATTAGCGCTTTTTTAAAATTAGAATTAGAAGAATTCAGTCAAAAAT ACGTTAAAAAGGTGGGGTATAAGTTCTCTTTACTAGAAAAAGACGCTAAAGAGTTGGGTTTGGCGTGCGTGTTTTTGGAT TTGGAGACGAAAAAATGCCAGATTTATAGCGTGCGCCCTAAGCAATGCCAAACTTTTCCTTTTTGGGAGAGCGTGAAAAC TTTCTCTAAAGAGCGAAAGGAAGCTTTTTGTCAAAGCTGTCCGGGCATTACACAAAAAACCAAAGAAACTAAAGTGCGCT AA
Upstream 100 bases:
>100_bases GAGCGCTCAAAGCCAATTGCCCTTAAAAATTTCTAAAGATGATGAAGGGTTGTTGGTGCAATTTAGCGTGAGTATTGATC TCCAATAGGATAGGGGTAGT
Downstream 100 bases:
>100_bases AATTCACTTCAGTGATACAAAAAAGGAAATAAAATAATGAATATTCAAATAAAAAAAAGGTTTTTAGCGAGTTTGTTGCT TTTTAGCCTGTTTTGCCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MMQGFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLD LETKKCQIYSVRPKQCQTFPFWESVKTFSKERKEAFCQSCPGITQKTKETKVR
Sequences:
>Translated_133_residues MMQGFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLD LETKKCQIYSVRPKQCQTFPFWESVKTFSKERKEAFCQSCPGITQKTKETKVR >Mature_133_residues MMQGFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLD LETKKCQIYSVRPKQCQTFPFWESVKTFSKERKEAFCQSCPGITQKTKETKVR
Specific function: Unknown
COG id: COG0727
COG function: function code R; Predicted Fe-S-cluster oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0661 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005358 [H]
Pfam domain/function: PF03692 UPF0153 [H]
EC number: NA
Molecular weight: Translated: 15307; Mature: 15307
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 6.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQGFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKLELEEFSQKYVKKVGY CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC KFSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKERKEAFCQSC CHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC PGITQKTKETKVR CCCCCCCCCCCCC >Mature Secondary Structure MMQGFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQKISAFLKLELEEFSQKYVKKVGY CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC KFSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWESVKTFSKERKEAFCQSC CHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC PGITQKTKETKVR CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]