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The map label for this gene is 108562702

Identifier: 108562702

GI number: 108562702

Start: 280639

End: 281931

Strand: Direct

Name: 108562702

Synonym: HPAG1_0277

Alternate gene names: NA

Gene position: 280639-281931 (Clockwise)

Preceding gene: 108562701

Following gene: 108562703

Centisome position: 17.58

GC content: 37.28

Gene sequence:

>1293_bases
ATGAATATTCAAATAAAAAAAAGGTTTTTAGCGAGTTTGTTGCTTTTTAGCCTGTTTTGCCTTAAGGCTGAAACCCTTTC
AGAAGATCATCAAATTCTGTTGAGTTCAGACGCTTTCCATAGAGGGGATTTTGCTGCCGCTCAAAAAGGCTATATGAATC
TCTATAAGCAAACCAATAAGGTGGTGTATGCTAAAGAAGCAGCCATTTCAGCGGCGAGTTTAGGGGACATTAAAACCGCT
ATGCATTTAGCCATGCTCTATCAAAAAATCACCAATAATCGTAACGATGTTTCTATCAATAAGATTTTAGTGGATGGCTA
TGCGCAAATGGGGCAGATTGATAAGGCGATTGAATTGTTGCACAAAATCCGTAAAGAAGAAAAGACCATAGCCACAGACA
ATGTGTTAGGGACTTTGTATTTGACTCAAAAGCGTTTGGATAAGGCTTTCCCGTTGTTGAATAAGTTTTATAACCAAGTG
CATGATGAAGACAGCCTAGAAAAACTCATTACAATCTATTTTTTGCAAAACCGCAAAAAAGAGGGCTTGGATTTGTTGCA
ATCTCATATAGACAGGTATGGTTGCTCAGAGCAATTGTGCCAAAAAGCGCTCAACACTTTTACGCAATTTAACGAGCTTG
ATTTGGCTAAAATAACTTTCGCTCGTTTGTATGAAAAAAACCCTATTGTTCAAAACGCCCAATTTTACATAGGGGTATTA
ATCTTGTTAAAAGAGTTTGATAAGGCCCAGAAAATCGCAGAATTATTCCCTTTTGACAGGCGTTTGTTGTTGGATTTATA
CACTGCACAAAAGAAATTCGCTCAAGCTTCCAAACAGGCTTCTTTGATCTATCAAGAAAAAAAAGACCCTAAATTCTTAG
GATTAGAGGCCATTTATCATTATGAAAGCTTGAGCGCGAATAAGAAAAAACTCACCAAAGAAGAGATGCTGCCTATCATT
CAAAAATTAGAGCAAGCCACCAAAGAGCGCCAGCAAATACTCGCTAAAACCAAAGATAAAGAAGACGCGCAAGACGCTTT
CTTTTATAATTTTTTAGGGTATTCCTTAATAGATTATGACATGGACATTAAAAGGGGCATGGATTTTGTGAGGAAAGCCT
TAGCGTTGGATTCTGGATCAGTGCTTTATTTGGATTCTTTAGCATGGGGTTATTACAAATTGGGGAATTGTTTGGAGGCT
AAAAAAATTTTTTCTAGCATCGCTAAAGAGTCTATCCAAGCCGAACCCGAATTAAAAGAGCACAATAAGATCATTCAAGA
ATGCAAGAAATAG

Upstream 100 bases:

>100_bases
GGAAGCTTTTTGTCAAAGCTGTCCGGGCATTACACAAAAAACCAAAGAAACTAAAGTGCGCTAAAATTCACTTCAGTGAT
ACAAAAAAGGAAATAAAATA

Downstream 100 bases:

>100_bases
GGATTTTAGAAAATTTACAAAAAAGCTTAGCCTTAAAAGAGGGCATGCTTTCTTATGAAATGTTAGGTAAAAGCCTGTCG
TATAACCCTTACTTGCCTAG

Product: ATP-dependent nuclease

Products: NA

Alternate protein names: Tetratricopeptide Repeat Domain Protein; ATP Dependent Nuclease AddB; ATP-Dependent Nuclease; Tpr Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Lipoprotein

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNIQIKKRFLASLLLFSLFCLKAETLSEDHQILLSSDAFHRGDFAAAQKGYMNLYKQTNKVVYAKEAAISAASLGDIKTA
MHLAMLYQKITNNRNDVSINKILVDGYAQMGQIDKAIELLHKIRKEEKTIATDNVLGTLYLTQKRLDKAFPLLNKFYNQV
HDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKITFARLYEKNPIVQNAQFYIGVL
ILLKEFDKAQKIAELFPFDRRLLLDLYTAQKKFAQASKQASLIYQEKKDPKFLGLEAIYHYESLSANKKKLTKEEMLPII
QKLEQATKERQQILAKTKDKEDAQDAFFYNFLGYSLIDYDMDIKRGMDFVRKALALDSGSVLYLDSLAWGYYKLGNCLEA
KKIFSSIAKESIQAEPELKEHNKIIQECKK

Sequences:

>Translated_430_residues
MNIQIKKRFLASLLLFSLFCLKAETLSEDHQILLSSDAFHRGDFAAAQKGYMNLYKQTNKVVYAKEAAISAASLGDIKTA
MHLAMLYQKITNNRNDVSINKILVDGYAQMGQIDKAIELLHKIRKEEKTIATDNVLGTLYLTQKRLDKAFPLLNKFYNQV
HDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKITFARLYEKNPIVQNAQFYIGVL
ILLKEFDKAQKIAELFPFDRRLLLDLYTAQKKFAQASKQASLIYQEKKDPKFLGLEAIYHYESLSANKKKLTKEEMLPII
QKLEQATKERQQILAKTKDKEDAQDAFFYNFLGYSLIDYDMDIKRGMDFVRKALALDSGSVLYLDSLAWGYYKLGNCLEA
KKIFSSIAKESIQAEPELKEHNKIIQECKK
>Mature_430_residues
MNIQIKKRFLASLLLFSLFCLKAETLSEDHQILLSSDAFHRGDFAAAQKGYMNLYKQTNKVVYAKEAAISAASLGDIKTA
MHLAMLYQKITNNRNDVSINKILVDGYAQMGQIDKAIELLHKIRKEEKTIATDNVLGTLYLTQKRLDKAFPLLNKFYNQV
HDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKITFARLYEKNPIVQNAQFYIGVL
ILLKEFDKAQKIAELFPFDRRLLLDLYTAQKKFAQASKQASLIYQEKKDPKFLGLEAIYHYESLSANKKKLTKEEMLPII
QKLEQATKERQQILAKTKDKEDAQDAFFYNFLGYSLIDYDMDIKRGMDFVRKALALDSGSVLYLDSLAWGYYKLGNCLEA
KKIFSSIAKESIQAEPELKEHNKIIQECKK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49610; Mature: 49610

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA