| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488309
Identifier: 103488309
GI number: 103488309
Start: 2987016
End: 2988125
Strand: Reverse
Name: 103488309
Synonym: Sala_2832
Alternate gene names: NA
Gene position: 2988125-2987016 (Counterclockwise)
Preceding gene: 103488310
Following gene: 103488308
Centisome position: 89.33
GC content: 63.33
Gene sequence:
>1110_bases ATGACCATCACCATCAACGCCGCTTTCGACAGCGGCAACATCGTCGTGGACGCCATTGACGGCACATCCGCCCGCCTGTC GATCCGCAAGGATCGCGAATCGGATTTTTTCCAGTGGTTCCACTTTCGCGTCGCCTGCACCGTCGGCGATGCGCTCGACC TCGCGATTACCGGGCTCGATGCGTCGGCCTATCCCGACGGCTGGCTTGGCTATGCGGCGTGCGCCAGCTATGACCGCGAA AGCTGGTTCCGCCTTGACACCACCTATGATGCGGGAACCTTGACGATCCGGCATACGGCCGAGGGTCCGCTCCTGTGGGT CGCCTATTTCGCGCCCTATTCGATGGAACGGCACCATGACCTGATCGCGTCGGTCGCCGAATGCGAGGGCGTGACCTATC GCTGCCTTGGCACCAGCCTCGAAGGCCAGCCGATCGACTGCCTCGAAATGGGCAGCGGCGATACGCAGGTGTGGCTCTAC GCGCGCCAGCATCCGGGCGAGAGCATGGCCGAATGGTGGATGGAGGGCGCGCTCGAAATGCTCACCGACCCGGCCGACCC GCACGCGCGTGCGCTCCGGCAGAAATGCCGTTTCCATATCGTGCCGAACATGAACCCCGACGGCTCGCGCCGCGGCCATC TGCGCACCAACTATGCGGGCGTGAACCTCAACCGCGAATGGGACAATCCGACCGCCGAGCGCAGCCCCGAAGTGCTGTGC GTTCGCAATGCGATGGACGAAAGCGGTGTCGACTGGGCGATCGACGTCCATGGTGATGAGGCGATTCCGGCGGTCTTTCT CGCGGGATTCGAGGGCATTCCGTCGCTGAAACCCGACCAGATAGACAAGTTCAAGGCGTTCGAATCCGCGCTCGCCGCGA ACACCCCCGATTTCCAGCTCGATCTCGGCTATGCCGAATCGGCGCCGGGGCAGGCGAATCTGTCGATGTCGACGACGCAG CTCGCCGAACGCTTCGGTGCGGTGTCGATGACGCTCGAGATGCCGTTCAAGGACAATCGTGACCTGCCCGATCCCGTTCA GGGCTGGTCGCCCGAACGGTCGAAGCGGCTGGCGCATGCCTGTCTTCAGACGCTGGACCATATTTTGTGA
Upstream 100 bases:
>100_bases TCAAGGCGCCCGCCAACCAGCCGAGCCTTGCCGCGGCGAAACTGGCCGAAGCCCTATTCAAGGACTTCCCCGGCGAATCG GGACGCACTATCAGCGTCCC
Downstream 100 bases:
>100_bases GCGACGCCTGGCGGATCGTCGAGGATGATCTGTCGGGCGCGGGGATCCGCGCGCTGCTCGAGGCGCATTTTGCGGGGATG CTCGCCCATTCGCCCGTGGG
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTITINAAFDSGNIVVDAIDGTSARLSIRKDRESDFFQWFHFRVACTVGDALDLAITGLDASAYPDGWLGYAACASYDRE SWFRLDTTYDAGTLTIRHTAEGPLLWVAYFAPYSMERHHDLIASVAECEGVTYRCLGTSLEGQPIDCLEMGSGDTQVWLY ARQHPGESMAEWWMEGALEMLTDPADPHARALRQKCRFHIVPNMNPDGSRRGHLRTNYAGVNLNREWDNPTAERSPEVLC VRNAMDESGVDWAIDVHGDEAIPAVFLAGFEGIPSLKPDQIDKFKAFESALAANTPDFQLDLGYAESAPGQANLSMSTTQ LAERFGAVSMTLEMPFKDNRDLPDPVQGWSPERSKRLAHACLQTLDHIL
Sequences:
>Translated_369_residues MTITINAAFDSGNIVVDAIDGTSARLSIRKDRESDFFQWFHFRVACTVGDALDLAITGLDASAYPDGWLGYAACASYDRE SWFRLDTTYDAGTLTIRHTAEGPLLWVAYFAPYSMERHHDLIASVAECEGVTYRCLGTSLEGQPIDCLEMGSGDTQVWLY ARQHPGESMAEWWMEGALEMLTDPADPHARALRQKCRFHIVPNMNPDGSRRGHLRTNYAGVNLNREWDNPTAERSPEVLC VRNAMDESGVDWAIDVHGDEAIPAVFLAGFEGIPSLKPDQIDKFKAFESALAANTPDFQLDLGYAESAPGQANLSMSTTQ LAERFGAVSMTLEMPFKDNRDLPDPVQGWSPERSKRLAHACLQTLDHIL >Mature_368_residues TITINAAFDSGNIVVDAIDGTSARLSIRKDRESDFFQWFHFRVACTVGDALDLAITGLDASAYPDGWLGYAACASYDRES WFRLDTTYDAGTLTIRHTAEGPLLWVAYFAPYSMERHHDLIASVAECEGVTYRCLGTSLEGQPIDCLEMGSGDTQVWLYA RQHPGESMAEWWMEGALEMLTDPADPHARALRQKCRFHIVPNMNPDGSRRGHLRTNYAGVNLNREWDNPTAERSPEVLCV RNAMDESGVDWAIDVHGDEAIPAVFLAGFEGIPSLKPDQIDKFKAFESALAANTPDFQLDLGYAESAPGQANLSMSTTQL AERFGAVSMTLEMPFKDNRDLPDPVQGWSPERSKRLAHACLQTLDHIL
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31657119, Length=307, Percent_Identity=26.7100977198697, Blast_Score=89, Evalue=9e-18, Organism=Homo sapiens, GI120444924, Length=189, Percent_Identity=31.7460317460317, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI170763513, Length=285, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI222352158, Length=335, Percent_Identity=24.7761194029851, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI78482633, Length=87, Percent_Identity=40.2298850574713, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI118421091, Length=87, Percent_Identity=40.2298850574713, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202888, Length=330, Percent_Identity=24.5454545454545, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115533904, Length=374, Percent_Identity=23.5294117647059, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24641847, Length=344, Percent_Identity=24.7093023255814, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI161077807, Length=344, Percent_Identity=24.7093023255814, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28571179, Length=344, Percent_Identity=24.7093023255814, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641845, Length=344, Percent_Identity=24.7093023255814, Blast_Score=76, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 40956; Mature: 40825
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITINAAFDSGNIVVDAIDGTSARLSIRKDRESDFFQWFHFRVACTVGDALDLAITGLD CEEEEEEEECCCCEEEEEECCCCEEEEEECCCCHHHHHEEEEEEEEEECCCEEEEEECCC ASAYPDGWLGYAACASYDRESWFRLDTTYDAGTLTIRHTAEGPLLWVAYFAPYSMERHHD CCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHH LIASVAECEGVTYRCLGTSLEGQPIDCLEMGSGDTQVWLYARQHPGESMAEWWMEGALEM HHHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHH LTDPADPHARALRQKCRFHIVPNMNPDGSRRGHLRTNYAGVNLNREWDNPTAERSPEVLC HCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEE VRNAMDESGVDWAIDVHGDEAIPAVFLAGFEGIPSLKPDQIDKFKAFESALAANTPDFQL EECCCCCCCCEEEEEECCCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE DLGYAESAPGQANLSMSTTQLAERFGAVSMTLEMPFKDNRDLPDPVQGWSPERSKRLAHA ECCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH CLQTLDHIL HHHHHHHCC >Mature Secondary Structure TITINAAFDSGNIVVDAIDGTSARLSIRKDRESDFFQWFHFRVACTVGDALDLAITGLD EEEEEEEECCCCEEEEEECCCCEEEEEECCCCHHHHHEEEEEEEEEECCCEEEEEECCC ASAYPDGWLGYAACASYDRESWFRLDTTYDAGTLTIRHTAEGPLLWVAYFAPYSMERHHD CCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHH LIASVAECEGVTYRCLGTSLEGQPIDCLEMGSGDTQVWLYARQHPGESMAEWWMEGALEM HHHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHH LTDPADPHARALRQKCRFHIVPNMNPDGSRRGHLRTNYAGVNLNREWDNPTAERSPEVLC HCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEE VRNAMDESGVDWAIDVHGDEAIPAVFLAGFEGIPSLKPDQIDKFKAFESALAANTPDFQL EECCCCCCCCEEEEEECCCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE DLGYAESAPGQANLSMSTTQLAERFGAVSMTLEMPFKDNRDLPDPVQGWSPERSKRLAHA ECCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH CLQTLDHIL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]