| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488310
Identifier: 103488310
GI number: 103488310
Start: 2988122
End: 2988748
Strand: Reverse
Name: 103488310
Synonym: Sala_2833
Alternate gene names: NA
Gene position: 2988748-2988122 (Counterclockwise)
Preceding gene: 103488311
Following gene: 103488309
Centisome position: 89.35
GC content: 69.86
Gene sequence:
>627_bases ATGATGCGTCATCTTTCCGTCGCCCTGCCCTTTGCTGCGGCGCTTGCACTCGGCGGCTGCGCTACCGCGGTTCCGCCGGT CGAGGTCACCCGGTTCCACAACAATGCCGTCGCCGGCTGGACGCCGGGAACGCGCTACACCGTTGACAGCGAACCGCTTG GCGATGCCGCCGCGATGGCGGACACCGCCACGCCCTCGCTCGAATGGGACAGCTATCGCCGCGCGGTCGAGCGCCAGTTG CAGTTGCAGGGGCTTGCGCCCGCGCCCGAAGGCGCGCGCGCGCCGCTCAAGGTCCGCATCGGCTTCGACCGCGCGATTGA CGAAAGCGTCGGCAAACGCGCGCCCGTGTCGGTCGGCGTCGGCGGTTCGACGGGCAGCTATGGCTCGGGCGTCGGGCTGG GCGTCGGGATCAACCTCGGCGGCGGTTCCCGGCGGATGGTCGATCTGCAACTGTCGGTGCGCATCGACGATGCCGCAACG GGGCAGGCCTTGTGGGAAGGCCGCGCGCTGACCGCGGTCCCGGTCAAGGCGCCCGCCAACCAGCCGAGCCTTGCCGCGGC GAAACTGGCCGAAGCCCTATTCAAGGACTTCCCCGGCGAATCGGGACGCACTATCAGCGTCCCATGA
Upstream 100 bases:
>100_bases AGATCGACAATCACATCTTCTATCGCTGACGGGTGGGCGGGCGCGCCCGCCCGCCATCGCGTTCATTGCCAAGCCATGAA TGCTGGCGCATGATGCGTGC
Downstream 100 bases:
>100_bases CCATCACCATCAACGCCGCTTTCGACAGCGGCAACATCGTCGTGGACGCCATTGACGGCACATCCGCCCGCCTGTCGATC CGCAAGGATCGCGAATCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP
Sequences:
>Translated_208_residues MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP >Mature_208_residues MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21385; Mature: 21385
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMA CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCCEEEECCCCCCCHHHHH DTATPSLEWDSYRRAVERQLQLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGV CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEC GGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAATGQALWEGRALTAVPVKAPAN CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHCCCCEEEEECCCCCC QPSLAAAKLAEALFKDFPGESGRTISVP CCCHHHHHHHHHHHHHCCCCCCCEEECC >Mature Secondary Structure MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMA CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCCEEEECCCCCCCHHHHH DTATPSLEWDSYRRAVERQLQLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGV CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEC GGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAATGQALWEGRALTAVPVKAPAN CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHCCCCEEEEECCCCCC QPSLAAAKLAEALFKDFPGESGRTISVP CCCHHHHHHHHHHHHHCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA