Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488310

Identifier: 103488310

GI number: 103488310

Start: 2988122

End: 2988748

Strand: Reverse

Name: 103488310

Synonym: Sala_2833

Alternate gene names: NA

Gene position: 2988748-2988122 (Counterclockwise)

Preceding gene: 103488311

Following gene: 103488309

Centisome position: 89.35

GC content: 69.86

Gene sequence:

>627_bases
ATGATGCGTCATCTTTCCGTCGCCCTGCCCTTTGCTGCGGCGCTTGCACTCGGCGGCTGCGCTACCGCGGTTCCGCCGGT
CGAGGTCACCCGGTTCCACAACAATGCCGTCGCCGGCTGGACGCCGGGAACGCGCTACACCGTTGACAGCGAACCGCTTG
GCGATGCCGCCGCGATGGCGGACACCGCCACGCCCTCGCTCGAATGGGACAGCTATCGCCGCGCGGTCGAGCGCCAGTTG
CAGTTGCAGGGGCTTGCGCCCGCGCCCGAAGGCGCGCGCGCGCCGCTCAAGGTCCGCATCGGCTTCGACCGCGCGATTGA
CGAAAGCGTCGGCAAACGCGCGCCCGTGTCGGTCGGCGTCGGCGGTTCGACGGGCAGCTATGGCTCGGGCGTCGGGCTGG
GCGTCGGGATCAACCTCGGCGGCGGTTCCCGGCGGATGGTCGATCTGCAACTGTCGGTGCGCATCGACGATGCCGCAACG
GGGCAGGCCTTGTGGGAAGGCCGCGCGCTGACCGCGGTCCCGGTCAAGGCGCCCGCCAACCAGCCGAGCCTTGCCGCGGC
GAAACTGGCCGAAGCCCTATTCAAGGACTTCCCCGGCGAATCGGGACGCACTATCAGCGTCCCATGA

Upstream 100 bases:

>100_bases
AGATCGACAATCACATCTTCTATCGCTGACGGGTGGGCGGGCGCGCCCGCCCGCCATCGCGTTCATTGCCAAGCCATGAA
TGCTGGCGCATGATGCGTGC

Downstream 100 bases:

>100_bases
CCATCACCATCAACGCCGCTTTCGACAGCGGCAACATCGTCGTGGACGCCATTGACGGCACATCCGCCCGCCTGTCGATC
CGCAAGGATCGCGAATCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL
QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT
GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP

Sequences:

>Translated_208_residues
MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL
QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT
GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP
>Mature_208_residues
MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMADTATPSLEWDSYRRAVERQL
QLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGVGGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAAT
GQALWEGRALTAVPVKAPANQPSLAAAKLAEALFKDFPGESGRTISVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21385; Mature: 21385

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMA
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCCEEEECCCCCCCHHHHH
DTATPSLEWDSYRRAVERQLQLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGV
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEC
GGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAATGQALWEGRALTAVPVKAPAN
CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHCCCCEEEEECCCCCC
QPSLAAAKLAEALFKDFPGESGRTISVP
CCCHHHHHHHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MMRHLSVALPFAAALALGGCATAVPPVEVTRFHNNAVAGWTPGTRYTVDSEPLGDAAAMA
CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCCEEEECCCCCCCHHHHH
DTATPSLEWDSYRRAVERQLQLQGLAPAPEGARAPLKVRIGFDRAIDESVGKRAPVSVGV
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEC
GGSTGSYGSGVGLGVGINLGGGSRRMVDLQLSVRIDDAATGQALWEGRALTAVPVKAPAN
CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHCCCCEEEEECCCCCC
QPSLAAAKLAEALFKDFPGESGRTISVP
CCCHHHHHHHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA