| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is apr [H]
Identifier: 103488303
GI number: 103488303
Start: 2980806
End: 2982962
Strand: Reverse
Name: apr [H]
Synonym: Sala_2826
Alternate gene names: 103488303
Gene position: 2982962-2980806 (Counterclockwise)
Preceding gene: 103488306
Following gene: 103488302
Centisome position: 89.17
GC content: 70.14
Gene sequence:
>2157_bases GTGCGCCGATCGGACGGCGTCAATTTCCACGGCGCGATCACCGCCTATCAGGCGGGGGCGAGCGGGCAGGGGGTTCTGGC CGGAGTAATCGACGACGGGATCGACGTCGACAGCCCCGAATTTGCCGGGCGCATCTCGCCGCTGTCGGCCGACCTTGCCG GGTCGCGCGGGATCGACGGCGAGGGCAGCCACGGCACCAATGTCGCGCAGGTGCTGCTCGGCGCAAAAAACGACGCGGGT ACGATGGGGATCGCCTTCAACGCCGGCCTGCTCGTGCTGCGCGCCGACCAGCCGGGAAGCTGCGCGACCGAAGATCCGGC GAACGACGAAAGCGGCTGCCGCTTTCCCGAAAGCGTGATCGCCGCAGGGCTCGACCGGGCCGTGAGCGCAGGGGCGCGCG TCGTCAACATCTCGCTCGGCGGCGACGATCCGCCCGGCGCGACGCTCCGCGCCGCGGTGTCGCGCGCGACCGCGGCGGGG ATCATCGTCATCCTGTCGGCGGGTAACGAGGGCGACACGACCGCGGGCGGCAACGACCCGAACAATCCCGGCCGCTTTGC GCAGGGGCTGCGCGATGCCGGGGGCGGGCTGGTCGTCATCGCCGGTTCGGTCGATGAAAATGGCGCGATCTCCGGCTTCA GCAATCGCGCGGGCGCCTATGCCGCCTCCTATCTGTCGGCGCTCGGCGAAGGCGTATGCTGCGTTTATGAAAATGGCGCG CTCAAGACCGAGGGCAATTTTGTCTTTCTGCTCAACGGCACCAGCTTCGCCGCGCCGCAGATCGCCGGGGCCGTCGCGCT GATTGCCCAGGCCTTTCCCAACCTGACCAGCCAGCAGATCGTCGAGCTGCTCTATCAATCGGCGCGCGACGCGGGGGCGG CGGGCGACGATGCCGTCTATGGTCAGGGCATTCTCGACATCGCACGCGCCTTTCAGCCGATGGGGGCGACGACGCTGGCG GGTAGCGCGACCGCAGTGGCGCTGGGCACGCCGCTCGGCATGTTGGGCGGCCCGATGGGCGATGCGGGGGGCGGCGCGAC GGGGATTGTCACCGACGGTTTCGGCCGCGCCTTCAATGTCGATTTCGGGCAGTCGCTCGCGCCGCGCCGCCCCGATTTCA AGCTGTCGGGCGCGATCGGCGGGCGCGTCCGCCAGCAGAGCGCGGCGAGCCGCTCGCTTGCACTGTCGCTCGTCACCGCG CCCGGCGCGGGCGGCAGCGATGCGCTCGCGGGGCTGTCCTACCATGATGCGCAACGCGCGCGCACCCTCGCGGCCTCGGT GATGATGCGGCTCGGTGCGCACACGCGTCTCGGGTTTGCGGCGGGTCGCGGGACCGGTGGCCTCCTCGCGGGTGAGCGCG GCGAAAGCGGCCATGCGATGCTGATCGGCGACGCCGCGCACGAAGGGATCGGCTTTGCGGCCAGCCCCGGTATCGGGACA TTGCTTCGTCATAATATCATTAATAATCAATATATTAATATATATGCCGAATCCGGGCGCGTGTCGGGTTCGCGGTGGCA GGACGATCCGCTCCCCGGCCATAGCGCGCGCCGCGACAGCCGCTATCAGCGTATCGGCGCTTCGTGGGACGGCCGCTTCG GTCCGCTCCGTCCGTCGCTCGGCGCGAGCTGGCTCCGCGAATCGGACAGCCTGCTCGGCGCGCGGTTCGGCCCTTTTTTC GGCGCGGGCGGTGCGACCAGCCTGGTCGGCGATGCCGGCCTGATATTCGACGCGCCGGGCCGATGGCAAATCGGCGGCGC CTGGCGGCAGATGTGGACGCGCCCCGACGCCCGCGGCCTCGTCGCGGGGGGCGCGCTCTGGTCGGCGGCCTTTTCGTTCG ACATTGCCAAGGCGGGGCTGGTGCGGCCGGGCGACCGCGCCGCGCTGCGGTTCGCGCAGCCGCTGCGCGTCGCGCGCGGC GGCATCGACCTCATGCTTCCGGTCGCCTATGATCATGGCAGCGGCCGCGCCGATTTCGGCCGCCGCATCTATAACCTCGC CCCCACCGGCCGCGAACTGGTGGTCGAGGCGAGCTATGCGCTGCCGCTGTTCGGCGGCGACCTGATCGCCAACAGCTGGT GGCGCCGCGATCCGGGGCATATCGCCGCCATGCCCGACGACAAAGGCGCGGCGCTGCGCTTTACGATGGGCTTCTGA
Upstream 100 bases:
>100_bases TGCGGGGCCGTCGCCGACCCCGGCCCCGCCGCCAGCCCCGGCTCCGACGCCAACTCCGACACCCACTCCGCCGCCGGTCG GCAATTTCGACACCGCCGAG
Downstream 100 bases:
>100_bases TCGGCTTTAACCGCCTGCGTGCAATAACAGGGGAAGCAGGATGAAGCCTTTCCATCGCTTGTCGCTCGCGCTGGTCGGCG CGGCGCTCGCCACGCCGCTG
Product: peptidase S8/S53 subtilisin kexin sedolisin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MRRSDGVNFHGAITAYQAGASGQGVLAGVIDDGIDVDSPEFAGRISPLSADLAGSRGIDGEGSHGTNVAQVLLGAKNDAG TMGIAFNAGLLVLRADQPGSCATEDPANDESGCRFPESVIAAGLDRAVSAGARVVNISLGGDDPPGATLRAAVSRATAAG IIVILSAGNEGDTTAGGNDPNNPGRFAQGLRDAGGGLVVIAGSVDENGAISGFSNRAGAYAASYLSALGEGVCCVYENGA LKTEGNFVFLLNGTSFAAPQIAGAVALIAQAFPNLTSQQIVELLYQSARDAGAAGDDAVYGQGILDIARAFQPMGATTLA GSATAVALGTPLGMLGGPMGDAGGGATGIVTDGFGRAFNVDFGQSLAPRRPDFKLSGAIGGRVRQQSAASRSLALSLVTA PGAGGSDALAGLSYHDAQRARTLAASVMMRLGAHTRLGFAAGRGTGGLLAGERGESGHAMLIGDAAHEGIGFAASPGIGT LLRHNIINNQYINIYAESGRVSGSRWQDDPLPGHSARRDSRYQRIGASWDGRFGPLRPSLGASWLRESDSLLGARFGPFF GAGGATSLVGDAGLIFDAPGRWQIGGAWRQMWTRPDARGLVAGGALWSAAFSFDIAKAGLVRPGDRAALRFAQPLRVARG GIDLMLPVAYDHGSGRADFGRRIYNLAPTGRELVVEASYALPLFGGDLIANSWWRRDPGHIAAMPDDKGAALRFTMGF
Sequences:
>Translated_718_residues MRRSDGVNFHGAITAYQAGASGQGVLAGVIDDGIDVDSPEFAGRISPLSADLAGSRGIDGEGSHGTNVAQVLLGAKNDAG TMGIAFNAGLLVLRADQPGSCATEDPANDESGCRFPESVIAAGLDRAVSAGARVVNISLGGDDPPGATLRAAVSRATAAG IIVILSAGNEGDTTAGGNDPNNPGRFAQGLRDAGGGLVVIAGSVDENGAISGFSNRAGAYAASYLSALGEGVCCVYENGA LKTEGNFVFLLNGTSFAAPQIAGAVALIAQAFPNLTSQQIVELLYQSARDAGAAGDDAVYGQGILDIARAFQPMGATTLA GSATAVALGTPLGMLGGPMGDAGGGATGIVTDGFGRAFNVDFGQSLAPRRPDFKLSGAIGGRVRQQSAASRSLALSLVTA PGAGGSDALAGLSYHDAQRARTLAASVMMRLGAHTRLGFAAGRGTGGLLAGERGESGHAMLIGDAAHEGIGFAASPGIGT LLRHNIINNQYINIYAESGRVSGSRWQDDPLPGHSARRDSRYQRIGASWDGRFGPLRPSLGASWLRESDSLLGARFGPFF GAGGATSLVGDAGLIFDAPGRWQIGGAWRQMWTRPDARGLVAGGALWSAAFSFDIAKAGLVRPGDRAALRFAQPLRVARG GIDLMLPVAYDHGSGRADFGRRIYNLAPTGRELVVEASYALPLFGGDLIANSWWRRDPGHIAAMPDDKGAALRFTMGF >Mature_718_residues MRRSDGVNFHGAITAYQAGASGQGVLAGVIDDGIDVDSPEFAGRISPLSADLAGSRGIDGEGSHGTNVAQVLLGAKNDAG TMGIAFNAGLLVLRADQPGSCATEDPANDESGCRFPESVIAAGLDRAVSAGARVVNISLGGDDPPGATLRAAVSRATAAG IIVILSAGNEGDTTAGGNDPNNPGRFAQGLRDAGGGLVVIAGSVDENGAISGFSNRAGAYAASYLSALGEGVCCVYENGA LKTEGNFVFLLNGTSFAAPQIAGAVALIAQAFPNLTSQQIVELLYQSARDAGAAGDDAVYGQGILDIARAFQPMGATTLA GSATAVALGTPLGMLGGPMGDAGGGATGIVTDGFGRAFNVDFGQSLAPRRPDFKLSGAIGGRVRQQSAASRSLALSLVTA PGAGGSDALAGLSYHDAQRARTLAASVMMRLGAHTRLGFAAGRGTGGLLAGERGESGHAMLIGDAAHEGIGFAASPGIGT LLRHNIINNQYINIYAESGRVSGSRWQDDPLPGHSARRDSRYQRIGASWDGRFGPLRPSLGASWLRESDSLLGARFGPFF GAGGATSLVGDAGLIFDAPGRWQIGGAWRQMWTRPDARGLVAGGALWSAAFSFDIAKAGLVRPGDRAALRFAQPLRVARG GIDLMLPVAYDHGSGRADFGRRIYNLAPTGRELVVEASYALPLFGGDLIANSWWRRDPGHIAAMPDDKGAALRFTMGF
Specific function: Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: =3.4.21.62 [H]
Molecular weight: Translated: 73162; Mature: 73162
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00136 SUBTILASE_ASP ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRSDGVNFHGAITAYQAGASGQGVLAGVIDDGIDVDSPEFAGRISPLSADLAGSRGIDG CCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCC EGSHGTNVAQVLLGAKNDAGTMGIAFNAGLLVLRADQPGSCATEDPANDESGCRFPESVI CCCCCCCHHHHEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH AAGLDRAVSAGARVVNISLGGDDPPGATLRAAVSRATAAGIIVILSAGNEGDTTAGGNDP HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC NNPGRFAQGLRDAGGGLVVIAGSVDENGAISGFSNRAGAYAASYLSALGEGVCCVYENGA CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC LKTEGNFVFLLNGTSFAAPQIAGAVALIAQAFPNLTSQQIVELLYQSARDAGAAGDDAVY EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC GQGILDIARAFQPMGATTLAGSATAVALGTPLGMLGGPMGDAGGGATGIVTDGFGRAFNV CCHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCCCEEEEEECCCCCEEEC DFGQSLAPRRPDFKLSGAIGGRVRQQSAASRSLALSLVTAPGAGGSDALAGLSYHDAQRA CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCEEEEEEEECCCCCCHHHHCCCCHHHHHHH RTLAASVMMRLGAHTRLGFAAGRGTGGLLAGERGESGHAMLIGDAAHEGIGFAASPGIGT HHHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCEECCCCHHH LLRHNIINNQYINIYAESGRVSGSRWQDDPLPGHSARRDSRYQRIGASWDGRFGPLRPSL HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC GASWLRESDSLLGARFGPFFGAGGATSLVGDAGLIFDAPGRWQIGGAWRQMWTRPDARGL CHHHHHHCCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCEEECHHHHHHHCCCCCCCE VAGGALWSAAFSFDIAKAGLVRPGDRAALRFAQPLRVARGGIDLMLPVAYDHGSGRADFG EECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHH RRIYNLAPTGRELVVEASYALPLFGGDLIANSWWRRDPGHIAAMPDDKGAALRFTMGF HHHEECCCCCCEEEEEEEEECEEECCHHHHCCCCCCCCCCEEECCCCCCCEEEEEECC >Mature Secondary Structure MRRSDGVNFHGAITAYQAGASGQGVLAGVIDDGIDVDSPEFAGRISPLSADLAGSRGIDG CCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCC EGSHGTNVAQVLLGAKNDAGTMGIAFNAGLLVLRADQPGSCATEDPANDESGCRFPESVI CCCCCCCHHHHEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH AAGLDRAVSAGARVVNISLGGDDPPGATLRAAVSRATAAGIIVILSAGNEGDTTAGGNDP HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC NNPGRFAQGLRDAGGGLVVIAGSVDENGAISGFSNRAGAYAASYLSALGEGVCCVYENGA CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC LKTEGNFVFLLNGTSFAAPQIAGAVALIAQAFPNLTSQQIVELLYQSARDAGAAGDDAVY EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC GQGILDIARAFQPMGATTLAGSATAVALGTPLGMLGGPMGDAGGGATGIVTDGFGRAFNV CCHHHHHHHHHCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCCCEEEEEECCCCCEEEC DFGQSLAPRRPDFKLSGAIGGRVRQQSAASRSLALSLVTAPGAGGSDALAGLSYHDAQRA CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCEEEEEEEECCCCCCHHHHCCCCHHHHHHH RTLAASVMMRLGAHTRLGFAAGRGTGGLLAGERGESGHAMLIGDAAHEGIGFAASPGIGT HHHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCEECCCCHHH LLRHNIINNQYINIYAESGRVSGSRWQDDPLPGHSARRDSRYQRIGASWDGRFGPLRPSL HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC GASWLRESDSLLGARFGPFFGAGGATSLVGDAGLIFDAPGRWQIGGAWRQMWTRPDARGL CHHHHHHCCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCEEECHHHHHHHCCCCCCCE VAGGALWSAAFSFDIAKAGLVRPGDRAALRFAQPLRVARGGIDLMLPVAYDHGSGRADFG EECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHH RRIYNLAPTGRELVVEASYALPLFGGDLIANSWWRRDPGHIAAMPDDKGAALRFTMGF HHHEECCCCCCEEEEEEEEECEEECCHHHHCCCCCCCCCCEEECCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6420308; 9826175 [H]