| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488302
Identifier: 103488302
GI number: 103488302
Start: 2979464
End: 2980765
Strand: Reverse
Name: 103488302
Synonym: Sala_2825
Alternate gene names: NA
Gene position: 2980765-2979464 (Counterclockwise)
Preceding gene: 103488303
Following gene: 103488301
Centisome position: 89.11
GC content: 68.82
Gene sequence:
>1302_bases ATGAAGCCTTTCCATCGCTTGTCGCTCGCGCTGGTCGGCGCGGCGCTCGCCACGCCGCTGGCCGCCCAGACGCCTGCGCG CACGGTGATCCACGCCGGGCATCTGCTCGCCGAACCCGGCAAGCCCGCGCGCGGCGCGGCGACGATCATTGTCGAGGGGG GCAAGATCGTCAGCATCGCCGACGGCCACCAACCTGCCGAGGCGGGCGCGACGCTGATCGACCTCAGCGACAAATATGTC CTGCCGGGCCTGATCGACAGCCATGTCCATCTGACGAGCGACGCGGGCGGCCTCGCGGGCCAGCTGGAGGAAGTGACGCT CAGCCCCGCCGCGCAGGCCTTCAACGCCGAGGTGAACGGGATGAAGACGCTGCGCGCGGGCTTCACGACGGTGCGCAACC TCGGCGACGGCGACGGTGCGACGCTGGCGCTCCGCGACGCGATCCTTGCGGGCAAGGTGCAGGGGCCGCGCATCGTCGAT GCCGGCGCCAGCATCTCGGGCAGCGCCGGGCATATGGACGGTTCCCTGGGCTATCGCGACGAGCTGCGGCCCTTCTTCGC GGGGGCGGGCAATACCTGCAACGGCGCCGACGATTGCCGCCGCGCGGTGCGGCTCCAGATCGGGCGCGGCGCCGACGTGA TCAAATTCGCGTCCACCGGCGGGGTCAACAGCCGGATCGGCGCGGGTCTCGGCAAGCAGATGTTCGACGACGAGGCGCAG GCGATCGTCGATACCGCGCATCTGTTCGGGAAAAAGGTCGCGGTCCACGCGCATGGCGCCGACGGCATCCGCCTCGCGCT CGCGGCGGGGGCCGATTCGATCGAACATGGCACGATCCTCGACGAGGCGACGATCGCCCAATGGGCGAAATCGAAAACCT ATTATGTTCCGACGCTCTCGACCGTGAACGGGTACAAGGAACGGCTCGCCGCCAATCCGGACGCGTATGAACCCGACGTG CTGGCGAAGATCCGGTGGCGCATCTCGATCACCGGCAAGAGCCTCGAGCAGCTCGTCCCGCGCGGGGTGAAGATCGCCTT CGGCACCGACGCCGGCGTGTCGAAGCACGGCCGCAACGGCGACGAGTTCGAACTGATGGTCCAGCACGGCATGACGCCTC TCGAGGCGCTGAAGGCGGCGACGGTGAACGCCGCCGATCTGCTCGGCCTCGCCGACCAGATCGGCAGCATCGCGCCGGGC AAGAGCGCCGACATTATCGCGGTGGCCAGCGATCCGCTCGCCGACGTCCGCGTGCTCAAAAAGGTCGATTTCGTCATGGC GCGGGGCAGGGTGGTCGACTGA
Upstream 100 bases:
>100_bases CATATCGCCGCCATGCCCGACGACAAAGGCGCGGCGCTGCGCTTTACGATGGGCTTCTGATCGGCTTTAACCGCCTGCGT GCAATAACAGGGGAAGCAGG
Downstream 100 bases:
>100_bases ACCGCCACCCTTTGCGTCTCCCGCTTGCTTCAAGGAATGAACGATGATCCTTTCGCTCGCCGCCGCCGCGCTCGCCGCCG CACAGGCCGCCGCGCCCCAG
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MKPFHRLSLALVGAALATPLAAQTPARTVIHAGHLLAEPGKPARGAATIIVEGGKIVSIADGHQPAEAGATLIDLSDKYV LPGLIDSHVHLTSDAGGLAGQLEEVTLSPAAQAFNAEVNGMKTLRAGFTTVRNLGDGDGATLALRDAILAGKVQGPRIVD AGASISGSAGHMDGSLGYRDELRPFFAGAGNTCNGADDCRRAVRLQIGRGADVIKFASTGGVNSRIGAGLGKQMFDDEAQ AIVDTAHLFGKKVAVHAHGADGIRLALAAGADSIEHGTILDEATIAQWAKSKTYYVPTLSTVNGYKERLAANPDAYEPDV LAKIRWRISITGKSLEQLVPRGVKIAFGTDAGVSKHGRNGDEFELMVQHGMTPLEALKAATVNAADLLGLADQIGSIAPG KSADIIAVASDPLADVRVLKKVDFVMARGRVVD
Sequences:
>Translated_433_residues MKPFHRLSLALVGAALATPLAAQTPARTVIHAGHLLAEPGKPARGAATIIVEGGKIVSIADGHQPAEAGATLIDLSDKYV LPGLIDSHVHLTSDAGGLAGQLEEVTLSPAAQAFNAEVNGMKTLRAGFTTVRNLGDGDGATLALRDAILAGKVQGPRIVD AGASISGSAGHMDGSLGYRDELRPFFAGAGNTCNGADDCRRAVRLQIGRGADVIKFASTGGVNSRIGAGLGKQMFDDEAQ AIVDTAHLFGKKVAVHAHGADGIRLALAAGADSIEHGTILDEATIAQWAKSKTYYVPTLSTVNGYKERLAANPDAYEPDV LAKIRWRISITGKSLEQLVPRGVKIAFGTDAGVSKHGRNGDEFELMVQHGMTPLEALKAATVNAADLLGLADQIGSIAPG KSADIIAVASDPLADVRVLKKVDFVMARGRVVD >Mature_433_residues MKPFHRLSLALVGAALATPLAAQTPARTVIHAGHLLAEPGKPARGAATIIVEGGKIVSIADGHQPAEAGATLIDLSDKYV LPGLIDSHVHLTSDAGGLAGQLEEVTLSPAAQAFNAEVNGMKTLRAGFTTVRNLGDGDGATLALRDAILAGKVQGPRIVD AGASISGSAGHMDGSLGYRDELRPFFAGAGNTCNGADDCRRAVRLQIGRGADVIKFASTGGVNSRIGAGLGKQMFDDEAQ AIVDTAHLFGKKVAVHAHGADGIRLALAAGADSIEHGTILDEATIAQWAKSKTYYVPTLSTVNGYKERLAANPDAYEPDV LAKIRWRISITGKSLEQLVPRGVKIAFGTDAGVSKHGRNGDEFELMVQHGMTPLEALKAATVNAADLLGLADQIGSIAPG KSADIIAVASDPLADVRVLKKVDFVMARGRVVD
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=324, Percent_Identity=34.5679012345679, Blast_Score=150, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 44795; Mature: 44795
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPFHRLSLALVGAALATPLAAQTPARTVIHAGHLLAEPGKPARGAATIIVEGGKIVSIA CCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHCCHHCCCCCCCCCCEEEEEEECCEEEEEE DGHQPAEAGATLIDLSDKYVLPGLIDSHVHLTSDAGGLAGQLEEVTLSPAAQAFNAEVNG CCCCCHHHCCEEEECCCCEECCCCCCCCEEEECCCCCCCCCHHHEECCHHHHHHCCCCCC MKTLRAGFTTVRNLGDGDGATLALRDAILAGKVQGPRIVDAGASISGSAGHMDGSLGYRD HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHH ELRPFFAGAGNTCNGADDCRRAVRLQIGRGADVIKFASTGGVNSRIGAGLGKQMFDDEAQ HCCHHHCCCCCCCCCHHHHHHHHEEEECCCCCEEEEECCCCCCCHHHCCCCHHHHHHHHH AIVDTAHLFGKKVAVHAHGADGIRLALAAGADSIEHGTILDEATIAQWAKSKTYYVPTLS HHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCHH TVNGYKERLAANPDAYEPDVLAKIRWRISITGKSLEQLVPRGVKIAFGTDAGVSKHGRNG HHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHHHHCCCCEEEEECCCCCCCCCCCCC DEFELMVQHGMTPLEALKAATVNAADLLGLADQIGSIAPGKSADIIAVASDPLADVRVLK CHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH KVDFVMARGRVVD HHHHHHHCCCCCC >Mature Secondary Structure MKPFHRLSLALVGAALATPLAAQTPARTVIHAGHLLAEPGKPARGAATIIVEGGKIVSIA CCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHCCHHCCCCCCCCCCEEEEEEECCEEEEEE DGHQPAEAGATLIDLSDKYVLPGLIDSHVHLTSDAGGLAGQLEEVTLSPAAQAFNAEVNG CCCCCHHHCCEEEECCCCEECCCCCCCCEEEECCCCCCCCCHHHEECCHHHHHHCCCCCC MKTLRAGFTTVRNLGDGDGATLALRDAILAGKVQGPRIVDAGASISGSAGHMDGSLGYRD HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHH ELRPFFAGAGNTCNGADDCRRAVRLQIGRGADVIKFASTGGVNSRIGAGLGKQMFDDEAQ HCCHHHCCCCCCCCCHHHHHHHHEEEECCCCCEEEEECCCCCCCHHHCCCCHHHHHHHHH AIVDTAHLFGKKVAVHAHGADGIRLALAAGADSIEHGTILDEATIAQWAKSKTYYVPTLS HHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCHH TVNGYKERLAANPDAYEPDVLAKIRWRISITGKSLEQLVPRGVKIAFGTDAGVSKHGRNG HHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHHHHCCCCEEEEECCCCCCCCCCCCC DEFELMVQHGMTPLEALKAATVNAADLLGLADQIGSIAPGKSADIIAVASDPLADVRVLK CHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH KVDFVMARGRVVD HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]