| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488245
Identifier: 103488245
GI number: 103488245
Start: 2919674
End: 2921599
Strand: Reverse
Name: 103488245
Synonym: Sala_2768
Alternate gene names: NA
Gene position: 2921599-2919674 (Counterclockwise)
Preceding gene: 103488246
Following gene: 103488244
Centisome position: 87.34
GC content: 64.43
Gene sequence:
>1926_bases ATGATGACGGGGGGCAGCCTGTGGCCGGTCATCGCGACGCTCGCGGCGCAGGGTGCGCCGGGGACCGAAGCGCCGTTGCC GCCGCCCGCGCCTGAAGACCCGCCGGTCGAGGCCGCGCCCGCCGAACCCGCCGCCGAAGAACTCACCCCGCCGCCGCCGC CCGTCGATTGGCAGGCGATGGTGCCGGACGATCTCGTGACCGACATGATCGAGGGCCGTCGCCGCCCCGGCTATCGCCCC GACCTGCCCGACGCGCTCAGCCAGGACAATGTCGGCGCGCTGCGCCCGCCGCCGCCGCAGGCGTTTCCGGGGATCGAGGA CCAGCTTCCCGTTCCCGACCGCTGGCGCCTCATCGAGACATTGGGCGTCGTCAAGGAACGCTGGTTCGACCCCTATCACC AGAACACGCTGAAGGGCGACCGCGCGATCGACCCCGACAAGGTCAAATGGCTGCCGATCAAGGGCGACGACTGGTTCTTC GTCGCCAATGCCGTGTCCGACACGGTGTTCGAACCGCGCACTTTTCCGATCCCCGTCGGTGTCCAGACGACCGAGCGACC GGGCAGCCTCGACGTGTTCGGCAAGGACCGCAGCTTTGTCTTTGCGCAGACCTTCATCGGCGGCGTCGCGCTGATCAAGG GATCGACCGCGTTCAAGCCGCCCGATGTCGAATATCGGCTGACGCTCGCCTGGCAGGCCAATTATGTCGACGTGCCCGAA CGGCGCGTGCTCGACGTGCGCCCGTCGAAGGCGAGCCATCGTTACGACAGCTTCCTGGGGGTGCAGGAACTGTTCGTCGA CAAGCATCTCGGCAACACGTCCGACCGCTATGATTTCTATTCGGTGCGGCTCGGCATCCAGCCGTTCCAGAGCGATTTTC GCGGTTTCCTGTTCAACGACAGCCAGCTGGGGCTGCGCTTCTTCGGCAATCGCGACAACAACCGCTTCCAGTATAATTTC GCCGCCTTCTGGCGGCTCGAAAAGGACACCAATTCGGGCCTCAACGACATCACCCAGACGCCGCGCGACGATTTCGTCCT CACCGCCAACCTCTATCGCCAGGATTTTCCGGTCGTCGGGCTGACCAGCCAGATCAGCGTGACCTATAATATGAACCGCG AAAAGAAGGACGTGCAGATCGACCACAACGGCTTTCCGGTGCGCCCGGCGCTGATCGGCGACCTGCGCGGGCGCGAATAT GATGTCGTTTATCTGGGCTACAGCGCCGACGGGCGGATCGGGCGGATCAACCTGACCGCGAGCTTCTACGCCGCGCTGGG CGAGGACCGGAACAGCTTTTTCACCAGCCAGCCGGCCGAAATCCGCGCGGGGTTCGGCGCGGTCGAACTCAGTTACGATT ATGACTGGATGCGCTTCCGCCTCTCGGGGCTTTATGCCACCGGCGACGGCGACCCCTATAACAAGACCGAGGGCGGATTC GACGCGATCTTTGAAAACCCGATCTTCGGCGGCGCCGACACCAGCTATTGGATCCGCCAGACGATCCCCTTCGCGGGCGG CGGGCGCGCGATCGCGATCAACGGCCGCAACGGCATCCTCAATTCGCTGCGCTCGTCGAAGGAGGAGGGGCAGTCGAACT TCAACAACCCCGGCACCATCTTCATCGGCGCCGGCGCCGATTTCGACCTGTCGCCGCAGACGCGCGTCAGCGTCAACGCC AACCATCTGTGGTTCGAAAACACCACGACCTTGCAGGCGCTGCGCGTCGAAGGATCGATCCCCAGGGACATCGGCTTCGA CCTGTCGGTCGCCGCGATCTGGCGGCCGAAGGCGACGCAGAATATCGTCGGGCGGCTTAGCGCCGCGGTGCTGCTCCCCG GCGACGGGTTCAAGGACCTGTTCGACAACAAGCAGAAGAACGACGCCTATGTGTCGATCCTCGCCAATGTGATTTTGAGT TTTTGA
Upstream 100 bases:
>100_bases GCTCGCCGACAATCGCACGGTGCGCCTGCGCTATATCAGTTGTCCCTTTGCGCCTTTCCTCGACACCGCGCAGCAAAATG TCTGCGACGGGCTATAGGCG
Downstream 100 bases:
>100_bases GATGGTGATGCGCAAACTCTTCGCCCTGCTGGCCTTTGTGACGCTCTGCGCCGCTTTCGGCGCGAGCGTCGGCCGCGCGG CCGAGGAGGAAAAGCCGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 641; Mature: 641
Protein sequence:
>641_residues MMTGGSLWPVIATLAAQGAPGTEAPLPPPAPEDPPVEAAPAEPAAEELTPPPPPVDWQAMVPDDLVTDMIEGRRRPGYRP DLPDALSQDNVGALRPPPPQAFPGIEDQLPVPDRWRLIETLGVVKERWFDPYHQNTLKGDRAIDPDKVKWLPIKGDDWFF VANAVSDTVFEPRTFPIPVGVQTTERPGSLDVFGKDRSFVFAQTFIGGVALIKGSTAFKPPDVEYRLTLAWQANYVDVPE RRVLDVRPSKASHRYDSFLGVQELFVDKHLGNTSDRYDFYSVRLGIQPFQSDFRGFLFNDSQLGLRFFGNRDNNRFQYNF AAFWRLEKDTNSGLNDITQTPRDDFVLTANLYRQDFPVVGLTSQISVTYNMNREKKDVQIDHNGFPVRPALIGDLRGREY DVVYLGYSADGRIGRINLTASFYAALGEDRNSFFTSQPAEIRAGFGAVELSYDYDWMRFRLSGLYATGDGDPYNKTEGGF DAIFENPIFGGADTSYWIRQTIPFAGGGRAIAINGRNGILNSLRSSKEEGQSNFNNPGTIFIGAGADFDLSPQTRVSVNA NHLWFENTTTLQALRVEGSIPRDIGFDLSVAAIWRPKATQNIVGRLSAAVLLPGDGFKDLFDNKQKNDAYVSILANVILS F
Sequences:
>Translated_641_residues MMTGGSLWPVIATLAAQGAPGTEAPLPPPAPEDPPVEAAPAEPAAEELTPPPPPVDWQAMVPDDLVTDMIEGRRRPGYRP DLPDALSQDNVGALRPPPPQAFPGIEDQLPVPDRWRLIETLGVVKERWFDPYHQNTLKGDRAIDPDKVKWLPIKGDDWFF VANAVSDTVFEPRTFPIPVGVQTTERPGSLDVFGKDRSFVFAQTFIGGVALIKGSTAFKPPDVEYRLTLAWQANYVDVPE RRVLDVRPSKASHRYDSFLGVQELFVDKHLGNTSDRYDFYSVRLGIQPFQSDFRGFLFNDSQLGLRFFGNRDNNRFQYNF AAFWRLEKDTNSGLNDITQTPRDDFVLTANLYRQDFPVVGLTSQISVTYNMNREKKDVQIDHNGFPVRPALIGDLRGREY DVVYLGYSADGRIGRINLTASFYAALGEDRNSFFTSQPAEIRAGFGAVELSYDYDWMRFRLSGLYATGDGDPYNKTEGGF DAIFENPIFGGADTSYWIRQTIPFAGGGRAIAINGRNGILNSLRSSKEEGQSNFNNPGTIFIGAGADFDLSPQTRVSVNA NHLWFENTTTLQALRVEGSIPRDIGFDLSVAAIWRPKATQNIVGRLSAAVLLPGDGFKDLFDNKQKNDAYVSILANVILS F >Mature_641_residues MMTGGSLWPVIATLAAQGAPGTEAPLPPPAPEDPPVEAAPAEPAAEELTPPPPPVDWQAMVPDDLVTDMIEGRRRPGYRP DLPDALSQDNVGALRPPPPQAFPGIEDQLPVPDRWRLIETLGVVKERWFDPYHQNTLKGDRAIDPDKVKWLPIKGDDWFF VANAVSDTVFEPRTFPIPVGVQTTERPGSLDVFGKDRSFVFAQTFIGGVALIKGSTAFKPPDVEYRLTLAWQANYVDVPE RRVLDVRPSKASHRYDSFLGVQELFVDKHLGNTSDRYDFYSVRLGIQPFQSDFRGFLFNDSQLGLRFFGNRDNNRFQYNF AAFWRLEKDTNSGLNDITQTPRDDFVLTANLYRQDFPVVGLTSQISVTYNMNREKKDVQIDHNGFPVRPALIGDLRGREY DVVYLGYSADGRIGRINLTASFYAALGEDRNSFFTSQPAEIRAGFGAVELSYDYDWMRFRLSGLYATGDGDPYNKTEGGF DAIFENPIFGGADTSYWIRQTIPFAGGGRAIAINGRNGILNSLRSSKEEGQSNFNNPGTIFIGAGADFDLSPQTRVSVNA NHLWFENTTTLQALRVEGSIPRDIGFDLSVAAIWRPKATQNIVGRLSAAVLLPGDGFKDLFDNKQKNDAYVSILANVILS F
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71288; Mature: 71288
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00259 GASTRIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTGGSLWPVIATLAAQGAPGTEAPLPPPAPEDPPVEAAPAEPAAEELTPPPPPVDWQAM CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE VPDDLVTDMIEGRRRPGYRPDLPDALSQDNVGALRPPPPQAFPGIEDQLPVPDRWRLIET CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH LGVVKERWFDPYHQNTLKGDRAIDPDKVKWLPIKGDDWFFVANAVSDTVFEPRTFPIPVG HHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEECCC VQTTERPGSLDVFGKDRSFVFAQTFIGGVALIKGSTAFKPPDVEYRLTLAWQANYVDVPE CCCCCCCCCEEEEECCCCEEEEHHHHCCEEEEECCCCCCCCCCCEEEEEEEECCEECCCC RRVLDVRPSKASHRYDSFLGVQELFVDKHLGNTSDRYDFYSVRLGIQPFQSDFRGFLFND CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHCCCEEEECC SQLGLRFFGNRDNNRFQYNFAAFWRLEKDTNSGLNDITQTPRDDFVLTANLYRQDFPVVG CCCCEEEECCCCCCEEEEEEEEEEEEECCCCCCCHHHHCCCCCCEEEEEEHHHCCCCEEE LTSQISVTYNMNREKKDVQIDHNGFPVRPALIGDLRGREYDVVYLGYSADGRIGRINLTA ECEEEEEEEECCCCCCCEEECCCCCCCCHHHHHCCCCCEEEEEEEEECCCCCEEEEEEHH SFYAALGEDRNSFFTSQPAEIRAGFGAVELSYDYDWMRFRLSGLYATGDGDPYNKTEGGF HHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCH DAIFENPIFGGADTSYWIRQTIPFAGGGRAIAINGRNGILNSLRSSKEEGQSNFNNPGTI HHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE FIGAGADFDLSPQTRVSVNANHLWFENTTTLQALRVEGSIPRDIGFDLSVAAIWRPKATQ EEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHH NIVGRLSAAVLLPGDGFKDLFDNKQKNDAYVSILANVILSF HHHHHCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MMTGGSLWPVIATLAAQGAPGTEAPLPPPAPEDPPVEAAPAEPAAEELTPPPPPVDWQAM CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE VPDDLVTDMIEGRRRPGYRPDLPDALSQDNVGALRPPPPQAFPGIEDQLPVPDRWRLIET CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH LGVVKERWFDPYHQNTLKGDRAIDPDKVKWLPIKGDDWFFVANAVSDTVFEPRTFPIPVG HHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEECCC VQTTERPGSLDVFGKDRSFVFAQTFIGGVALIKGSTAFKPPDVEYRLTLAWQANYVDVPE CCCCCCCCCEEEEECCCCEEEEHHHHCCEEEEECCCCCCCCCCCEEEEEEEECCEECCCC RRVLDVRPSKASHRYDSFLGVQELFVDKHLGNTSDRYDFYSVRLGIQPFQSDFRGFLFND CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHCCCEEEECC SQLGLRFFGNRDNNRFQYNFAAFWRLEKDTNSGLNDITQTPRDDFVLTANLYRQDFPVVG CCCCEEEECCCCCCEEEEEEEEEEEEECCCCCCCHHHHCCCCCCEEEEEEHHHCCCCEEE LTSQISVTYNMNREKKDVQIDHNGFPVRPALIGDLRGREYDVVYLGYSADGRIGRINLTA ECEEEEEEEECCCCCCCEEECCCCCCCCHHHHHCCCCCEEEEEEEEECCCCCEEEEEEHH SFYAALGEDRNSFFTSQPAEIRAGFGAVELSYDYDWMRFRLSGLYATGDGDPYNKTEGGF HHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCH DAIFENPIFGGADTSYWIRQTIPFAGGGRAIAINGRNGILNSLRSSKEEGQSNFNNPGTI HHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE FIGAGADFDLSPQTRVSVNANHLWFENTTTLQALRVEGSIPRDIGFDLSVAAIWRPKATQ EEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHH NIVGRLSAAVLLPGDGFKDLFDNKQKNDAYVSILANVILSF HHHHHCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA