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The map label for this gene is rpoE [C]

Identifier: 103488180

GI number: 103488180

Start: 2845253

End: 2845861

Strand: Reverse

Name: rpoE [C]

Synonym: Sala_2703

Alternate gene names: 103488180

Gene position: 2845861-2845253 (Counterclockwise)

Preceding gene: 103488181

Following gene: 103488179

Centisome position: 85.07

GC content: 67.98

Gene sequence:

>609_bases
ATGGCGCATCCTCCGCAGCGGCATTCAATCGCATCGTCGATCGATCCGGCGTTCGTCGCGCGCGTGCGCGGCGACCTGCT
CCGCTTCGCGCGTCTCCAGCTCGGCAGCGACGACGAAGCCGAGGATGCGGTGCAGGAAGCCCTCGCCGCGGCGCTGCGCA
ACGGCGATCAGTTTCGCGGCGAGGCGGCGCTCAAGACCTGGATGATCGCCATCCTGAAGAACAAAATCGCCGACCTCTTG
CGCCAGCGCCGACGCCGTCCGCTCGGCGCGAGCCAGATGGCGGCCGAGGAGGAGGATGGCGGCACGCTTCCGGCGCTGTT
CGACGAGCGCGGCATGTGGCGCGAAGCGGCGCGGCCCGCGGCATGGGAAAATCCCGAGGCGGGGCTGCACAGCGACCAGT
TCCTCGCCATTTTCGACGCCTGCCTGAACCGGCTGCCGGCGCAGCAGGGCCAGGTGTTCATGATGCGCGAAGTGGTCGAA
CTCGCCACCGATGAAATTTGCGACGAGCTTGGTCTCACCAGCGGGAACATCCATGTCATCCTGCACCGCGCGCGGCTCGC
GCTGCGCGCCTGTCTCCAGCATCACTGGTTCGCGGAGGCGGTGCGATGA

Upstream 100 bases:

>100_bases
CGCCGCCATCGACTGGCCCCGTTTCGCGCTCAACTATGCGGTGCCCTTTCTGGTGGCCAGCTATAGCGCGGCGCGCGTGC
GCCAGGCGATGGAGGGCTGA

Downstream 100 bases:

>100_bases
TGCTCAACTGCCACGACGCGACATTCCTGATGTCGCAGCGGCGCGAGCGCGATCTCCGCTTTTCGGAGCGCATGAAGCTG
CGCCTGCACGCGGGGCTGTG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAHPPQRHSIASSIDPAFVARVRGDLLRFARLQLGSDDEAEDAVQEALAAALRNGDQFRGEAALKTWMIAILKNKIADLL
RQRRRRPLGASQMAAEEEDGGTLPALFDERGMWREAARPAAWENPEAGLHSDQFLAIFDACLNRLPAQQGQVFMMREVVE
LATDEICDELGLTSGNIHVILHRARLALRACLQHHWFAEAVR

Sequences:

>Translated_202_residues
MAHPPQRHSIASSIDPAFVARVRGDLLRFARLQLGSDDEAEDAVQEALAAALRNGDQFRGEAALKTWMIAILKNKIADLL
RQRRRRPLGASQMAAEEEDGGTLPALFDERGMWREAARPAAWENPEAGLHSDQFLAIFDACLNRLPAQQGQVFMMREVVE
LATDEICDELGLTSGNIHVILHRARLALRACLQHHWFAEAVR
>Mature_201_residues
AHPPQRHSIASSIDPAFVARVRGDLLRFARLQLGSDDEAEDAVQEALAAALRNGDQFRGEAALKTWMIAILKNKIADLLR
QRRRRPLGASQMAAEEEDGGTLPALFDERGMWREAARPAAWENPEAGLHSDQFLAIFDACLNRLPAQQGQVFMMREVVEL
ATDEICDELGLTSGNIHVILHRARLALRACLQHHWFAEAVR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22552; Mature: 22421

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPPQRHSIASSIDPAFVARVRGDLLRFARLQLGSDDEAEDAVQEALAAALRNGDQFRG
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH
EAALKTWMIAILKNKIADLLRQRRRRPLGASQMAAEEEDGGTLPALFDERGMWREAARPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCC
AWENPEAGLHSDQFLAIFDACLNRLPAQQGQVFMMREVVELATDEICDELGLTSGNIHVI
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LHRARLALRACLQHHWFAEAVR
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AHPPQRHSIASSIDPAFVARVRGDLLRFARLQLGSDDEAEDAVQEALAAALRNGDQFRG
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH
EAALKTWMIAILKNKIADLLRQRRRRPLGASQMAAEEEDGGTLPALFDERGMWREAARPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCC
AWENPEAGLHSDQFLAIFDACLNRLPAQQGQVFMMREVVELATDEICDELGLTSGNIHVI
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LHRARLALRACLQHHWFAEAVR
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]