| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488172
Identifier: 103488172
GI number: 103488172
Start: 2836263
End: 2836871
Strand: Reverse
Name: 103488172
Synonym: Sala_2695
Alternate gene names: NA
Gene position: 2836871-2836263 (Counterclockwise)
Preceding gene: 103488173
Following gene: 103488166
Centisome position: 84.8
GC content: 64.04
Gene sequence:
>609_bases ATGTCCATCTTTCCCTCATTGCCGGTCGATGCCCAGCTCGCCGATGTGTTCCGCAGATTTACCACCGGCGTTCCGGCGCT CCTTTCCTATCATGACGATATCCTGCGCGACGATTCGCCGCTGACGGTCGCAACGCGCGAGTTGATCGCGGCCTATGTGT CGGGGCTCAATGCGTGCACCTATTGTCATGGCTCGCATCTGCTTGCCGCCGAAGCGTTTGGCATCGATCCGACATTGTTC GAGAGCCTGATGCAAGATGTCGAGACCGCTGCGATCGATCCGGCGCTTAAGCCGCTCCTTGCCTTTGTCGCCAAGCTCAC CCGCGAGCCTGCCAAGATCTGCGGCCGTGACGCGGCGGCGGTTTATGCCGCGGGCTGGAGCGAGGAAGCATTGTTCGCCG CGATCAGTGTCTGCGCGCTGTTCAATCTCATGAATCGCATCGTCGAGGGCGCGGGCGTCCGGATCGATCCCCTCGCCGAG GGCGAGGCTGAGCGCGCGGCGCGCGCGGCGCGACTGGCACCGGGGGAAACTGCGTCCGGCGCCCATGCGGCGGAACGCAG CTATTCGCTGCTGGCCGAGAAATGGGGCCTCGCGACAAGCAGGACGTAG
Upstream 100 bases:
>100_bases GCACTTTGCCCCGATCGCCGCAATATACACCGCGCTTTGCCTTGTCACTGTCGTGCAGCGATCGGTGATGGCTTGGCGCA TGTTTCGATAGGAAGATTTC
Downstream 100 bases:
>100_bases CCCGCTGTCCGCGCTTGTCGTGAGCGCCGCGCCGCCGCGCGCCCACAGCAGCCCAAGTACGGCTGCCGCCGCTGACATGA CGATCACGGCAGCATTGACG
Product: peroxidase-like
Products: NA
Alternate protein names: Peroxidase-Related; Alkylhydroperoxidase; Peroxidase-Like; Peroxidase-Like Protein; Carboxymuconolactone Decarboxylase Family Protein; Alkylhydroperoxidase Ahpd Family Core Domain; Peroxidase; Peroxidase-Related Subfamily; Peroxidase-Related Protein
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MSIFPSLPVDAQLADVFRRFTTGVPALLSYHDDILRDDSPLTVATRELIAAYVSGLNACTYCHGSHLLAAEAFGIDPTLF ESLMQDVETAAIDPALKPLLAFVAKLTREPAKICGRDAAAVYAAGWSEEALFAAISVCALFNLMNRIVEGAGVRIDPLAE GEAERAARAARLAPGETASGAHAAERSYSLLAEKWGLATSRT
Sequences:
>Translated_202_residues MSIFPSLPVDAQLADVFRRFTTGVPALLSYHDDILRDDSPLTVATRELIAAYVSGLNACTYCHGSHLLAAEAFGIDPTLF ESLMQDVETAAIDPALKPLLAFVAKLTREPAKICGRDAAAVYAAGWSEEALFAAISVCALFNLMNRIVEGAGVRIDPLAE GEAERAARAARLAPGETASGAHAAERSYSLLAEKWGLATSRT >Mature_201_residues SIFPSLPVDAQLADVFRRFTTGVPALLSYHDDILRDDSPLTVATRELIAAYVSGLNACTYCHGSHLLAAEAFGIDPTLFE SLMQDVETAAIDPALKPLLAFVAKLTREPAKICGRDAAAVYAAGWSEEALFAAISVCALFNLMNRIVEGAGVRIDPLAEG EAERAARAARLAPGETASGAHAAERSYSLLAEKWGLATSRT
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21451; Mature: 21319
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFPSLPVDAQLADVFRRFTTGVPALLSYHDDILRDDSPLTVATRELIAAYVSGLNACT CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH YCHGSHLLAAEAFGIDPTLFESLMQDVETAAIDPALKPLLAFVAKLTREPAKICGRDAAA HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCHHH VYAAGWSEEALFAAISVCALFNLMNRIVEGAGVRIDPLAEGEAERAARAARLAPGETASG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCCCCCC AHAAERSYSLLAEKWGLATSRT HHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SIFPSLPVDAQLADVFRRFTTGVPALLSYHDDILRDDSPLTVATRELIAAYVSGLNACT CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH YCHGSHLLAAEAFGIDPTLFESLMQDVETAAIDPALKPLLAFVAKLTREPAKICGRDAAA HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCHHH VYAAGWSEEALFAAISVCALFNLMNRIVEGAGVRIDPLAEGEAERAARAARLAPGETASG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCCCCCC AHAAERSYSLLAEKWGLATSRT HHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA