Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103488166
Identifier: 103488166
GI number: 103488166
Start: 2831868
End: 2832518
Strand: Reverse
Name: 103488166
Synonym: Sala_2689
Alternate gene names: NA
Gene position: 2832518-2831868 (Counterclockwise)
Preceding gene: 103488172
Following gene: 103488165
Centisome position: 84.67
GC content: 61.29
Gene sequence:
>651_bases ATGGAAGCGATCGAGGCTGCGACTGTGGTGATCGACACGATTGTGCAGATGGCGGGCGAAGCGCGACCACTCATGCAGCG TGTCCTTCCGCCTGCGGGCGTCCACTGGTGGGCGCATTATCCCGACGATGACGCGCGCGACAAGAAAACGCGCTCACGGT GGTATTATCATATACATCCGCCCGGTATGCGCGACCCGGATGAACACGGGCATTTTCATCTCTTTCTGCACCGAACCCAG CTCGACGCCGCGTCCGAACCGCTGGCCGTGCCTGCTGAAGGCGAGGCCGCGCCAGCCCATGTCGCGCATGTTGCAGGTCT GTCGGTCGATCACGACGGCGTACCTCGTGCCTGGTTCGCGACGAACCGGTGGGTAACCGACGAGTTCCTCTATCCGGCTG AAACGATGATCGCCCATCTCGACCGCTATAATGTCGATAATACAGAAGAAGATGATCTTGTGAACCGGCTGTTGACCGCC ATGGTGGCGCTCTACCGGTGCGAGCTGGCCGGGTTGCTGCGCGCCCGCGACGCGGCGTTAGCCGAACTGGTCAAGGCAGG CGGTGCGGCTGCCTATGAAGCGGGAAATGATATTCTGGCGATCTGTCCGATTGATCTCGACGCCAAGATCGGCGGCCTGG GCCTCGATTAG
Upstream 100 bases:
>100_bases TGTTTTCATATGCCGCTTGTCTTGCCAGTGCCGCCGATACAGCAAGGCGTCAGGGCCCGGATCCATTATTCGCAATTTTT CGCAATGTTCGGGGATGGTC
Downstream 100 bases:
>100_bases AAATCGATCCGCCAAGCCTTTTGCGGCGGTCGCCGAATCTCTGCGGCGGCTTTGACCTTCCCTTTTCAGGCGCGCGGCTC CGGTCTGTGTAACCAGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MEAIEAATVVIDTIVQMAGEARPLMQRVLPPAGVHWWAHYPDDDARDKKTRSRWYYHIHPPGMRDPDEHGHFHLFLHRTQ LDAASEPLAVPAEGEAAPAHVAHVAGLSVDHDGVPRAWFATNRWVTDEFLYPAETMIAHLDRYNVDNTEEDDLVNRLLTA MVALYRCELAGLLRARDAALAELVKAGGAAAYEAGNDILAICPIDLDAKIGGLGLD
Sequences:
>Translated_216_residues MEAIEAATVVIDTIVQMAGEARPLMQRVLPPAGVHWWAHYPDDDARDKKTRSRWYYHIHPPGMRDPDEHGHFHLFLHRTQ LDAASEPLAVPAEGEAAPAHVAHVAGLSVDHDGVPRAWFATNRWVTDEFLYPAETMIAHLDRYNVDNTEEDDLVNRLLTA MVALYRCELAGLLRARDAALAELVKAGGAAAYEAGNDILAICPIDLDAKIGGLGLD >Mature_216_residues MEAIEAATVVIDTIVQMAGEARPLMQRVLPPAGVHWWAHYPDDDARDKKTRSRWYYHIHPPGMRDPDEHGHFHLFLHRTQ LDAASEPLAVPAEGEAAPAHVAHVAGLSVDHDGVPRAWFATNRWVTDEFLYPAETMIAHLDRYNVDNTEEDDLVNRLLTA MVALYRCELAGLLRARDAALAELVKAGGAAAYEAGNDILAICPIDLDAKIGGLGLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23798; Mature: 23798
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAIEAATVVIDTIVQMAGEARPLMQRVLPPAGVHWWAHYPDDDARDKKTRSRWYYHIHP CCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECC PGMRDPDEHGHFHLFLHRTQLDAASEPLAVPAEGEAAPAHVAHVAGLSVDHDGVPRAWFA CCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE TNRWVTDEFLYPAETMIAHLDRYNVDNTEEDDLVNRLLTAMVALYRCELAGLLRARDAAL CCCEECHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AELVKAGGAAAYEAGNDILAICPIDLDAKIGGLGLD HHHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MEAIEAATVVIDTIVQMAGEARPLMQRVLPPAGVHWWAHYPDDDARDKKTRSRWYYHIHP CCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECC PGMRDPDEHGHFHLFLHRTQLDAASEPLAVPAEGEAAPAHVAHVAGLSVDHDGVPRAWFA CCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE TNRWVTDEFLYPAETMIAHLDRYNVDNTEEDDLVNRLLTAMVALYRCELAGLLRARDAAL CCCEECHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AELVKAGGAAAYEAGNDILAICPIDLDAKIGGLGLD HHHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA