| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488128
Identifier: 103488128
GI number: 103488128
Start: 2795849
End: 2796895
Strand: Reverse
Name: 103488128
Synonym: Sala_2651
Alternate gene names: NA
Gene position: 2796895-2795849 (Counterclockwise)
Preceding gene: 103488129
Following gene: 103488127
Centisome position: 83.61
GC content: 67.72
Gene sequence:
>1047_bases ATGCAAAGCCCCGCAACCATCATTGCCGAACGTCTCGCCGAGAATGCGGAGAGCGTGTGTCGCCGCTACCTGCCCAACGG GCACCGGGAAGGCCGCTACTGGCTGGTCGGCGACGTTCACAACACGCCGGGGCGAAGCCTCTATGTCCGTCTGGCCGCGT CCCCCGACGGGCGCGGCCAAGCCGGCAAATGGACCGATGCGCAGAGCGGCGATCATGGCGATCTGCTCGACATCATCGCC ATCACCCGGAACTGCCGGACCATGCGCGAGACGCTGGACGAAGCCCGGCATTTTCTGCGCCTGCCCATACCGCCGCCGTC CGAGGATAAGCCGGTTAGACGCAGCAAGGCGCCGACCGGCACACGGCAAGCAGCGCAGCGGCTCTGGGCAGCGGCGAAGC CAGTCGCCGGAAGCCCCGTCGCCGCCTATCTCGCATTCCGGCAAATCATCGACCTCACCGGCTGCGAGGCGCTCCGATTT CACGGCAACTGCTGGTATCGCGCGTCGAAGGACGACGCACCCGATACGCGTCCCGCATGGCCGGCGATGATCGCGGCGGT CACCGATCTCGACGGCAGCGTCACCGGGGCTCATCGGACCTGGCTGGAACCGGGCAGCTCCGACAAAGCTCCCGTCGCCT ATCCGCGCCGCGCCATGGGCTATCTGCTCGGACACGGCGTCCGGTTCGGGCCAGGTGGCCCCGTCATGATGGCGGGCGAA GGCATCGAGACCATGCTGTCGCTGCGCCAGGTCATGCCGCTGATGCCGGCGATCGCCGGGCTCTCGGCCGCGCATCTCGC TGCCATTCTGTTCCCGGCCATGCTGCGCCGGCTCTATGTCGCACGCGATGACGATCCTGCCGGTGCGGGGGCGTTGAAGA CGCTCACCGAGCGGGCGATCCCGGCGGGGATCGAGGTGGTGCCGCTCGAACCCAGGCTTGGGGATTTCAACGACGATCTT ACCACCTTCGGGCGGGAGCGGCTCACCCAGAGGCTGCGGGATCAACTCCGGACGGAGGATGCGGAGCGCTTCCTGATGCA GGGGTAA
Upstream 100 bases:
>100_bases TGCCGGCAGGGGCTGTCGGCGCCGATGTGCTGGACCGGCTGCTCGAGCGATATCCGATCGAACGGCTCTCCATGCGCAAG GCCGCCTGAGGAGCCCCGCG
Downstream 100 bases:
>100_bases GGGTTGGACTGCGGGGAACGTCTCTAGTCGCGGGTGATCACGCTCATCACCGGCATCTTCGAGACGCCGCGCGCTCGTGC CTTCGGTAGAGGGCGACTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL TTFGRERLTQRLRDQLRTEDAERFLMQG
Sequences:
>Translated_348_residues MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL TTFGRERLTQRLRDQLRTEDAERFLMQG >Mature_348_residues MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL TTFGRERLTQRLRDQLRTEDAERFLMQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38088; Mature: 38088
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQ CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC AGKWTDAQSGDHGDLLDIIAITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHCCCCCC TRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRFHGNCWYRASKDDAPDTRPAW HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCH PAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE HHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEEEECC GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAI CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC PAGIEVVPLEPRLGDFNDDLTTFGRERLTQRLRDQLRTEDAERFLMQG CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC >Mature Secondary Structure MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQ CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC AGKWTDAQSGDHGDLLDIIAITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHCCCCCC TRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRFHGNCWYRASKDDAPDTRPAW HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCH PAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE HHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEEEECC GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAI CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC PAGIEVVPLEPRLGDFNDDLTTFGRERLTQRLRDQLRTEDAERFLMQG CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA