| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488127
Identifier: 103488127
GI number: 103488127
Start: 2794602
End: 2795534
Strand: Reverse
Name: 103488127
Synonym: Sala_2650
Alternate gene names: NA
Gene position: 2795534-2794602 (Counterclockwise)
Preceding gene: 103488128
Following gene: 103488126
Centisome position: 83.57
GC content: 64.63
Gene sequence:
>933_bases ATGGCGACCGACCAGGACGATGGACACGAAGCGCAGCCCGGCTCTACCGCCTACCTGCTTCAGGAAATGCAGCTTTACGG CTGCCGTCCCTTCGAGGATGAACCCGATCATCGGCCCTTGCCGGACGACCGCATCGCCGGCGGCGCGGTCGCCGAGATGT TCGACGCGCTGGTCTCGTGCCTGATCGACACACGGATCGAACCCGACCTTGAGGATCTCGCCTGGGGCATCGTCAATGTC TTCCACCGCGCCGGCGAGCGGATCGAGCGCGAACTCGACGACAATGAGCAAGCGCAGAAACGGCTTCAGCGCGAACAGGA TGGCAGCGAGGTGAAGTCGGTCGAGTTGGAACGCAAGATCGCCGAAGGCATCACCACGATCGAGCGCCGGGACACCATGG AGTTTTTCCGCGATGCTGCCGCCGACCAGTTCCGCATCCATATCCGCAAGCCCTGGCTGCCGCGTTCGGGCGCAATGGTG AACCACAAGGCGCTGACCTCTGCAGTGCTCGACAGCCGCAAGGCGCTCGGCAAGCGCGCCTGGGAGAAGCAACGGGTCTT CGATCCCGATGGCGTGCGGATCGCCTTTACCGGCGGCGTCGACTGCAACGACCATCAGCGCATCTACGCCGTGCTGGACA AGGTCCACGCCCAGCTTCCGAACCTGATCCTGATGCACGGCGCGACGCCGACCGGCGCCGAACGCATCGCCGCCTGCTGG GCGCGCGACCGGGGTGTGCCGCAGGATCCCTACCGGCCCGACTGGAACCGGCACAAGAAGGCCGCGCCGTTCAAGCGCAA CGATGCCATGCTGGAGAAGATGCCGCGGGGTGTCATCGTGTTTCCGGGCACCGGCATCCAGGACAATCTCGCCGACAAGG CTCGCAAGATGGGCATCCGCGTCTGGGACTTTCGCAATCGAAGACGCGATTAA
Upstream 100 bases:
>100_bases GCCGCGCCCCAAGGGCCGCGGTTCTGTCCCGCTCCGCCCGCCGCCTGCCGTCGCCACGAAGGCCGCGAGAGGCGCGGCTG TCAGATCACGGAGATTTTCG
Downstream 100 bases:
>100_bases ATCCTTCTCGATTGCGGCCCACAGGATAGAAAAGCCGGCAAGCATCGATCCGCAGCATGGAACTGAGCGTAGAGGCCCCG CTATCCCAGCGCATTTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MATDQDDGHEAQPGSTAYLLQEMQLYGCRPFEDEPDHRPLPDDRIAGGAVAEMFDALVSCLIDTRIEPDLEDLAWGIVNV FHRAGERIERELDDNEQAQKRLQREQDGSEVKSVELERKIAEGITTIERRDTMEFFRDAAADQFRIHIRKPWLPRSGAMV NHKALTSAVLDSRKALGKRAWEKQRVFDPDGVRIAFTGGVDCNDHQRIYAVLDKVHAQLPNLILMHGATPTGAERIAACW ARDRGVPQDPYRPDWNRHKKAAPFKRNDAMLEKMPRGVIVFPGTGIQDNLADKARKMGIRVWDFRNRRRD
Sequences:
>Translated_310_residues MATDQDDGHEAQPGSTAYLLQEMQLYGCRPFEDEPDHRPLPDDRIAGGAVAEMFDALVSCLIDTRIEPDLEDLAWGIVNV FHRAGERIERELDDNEQAQKRLQREQDGSEVKSVELERKIAEGITTIERRDTMEFFRDAAADQFRIHIRKPWLPRSGAMV NHKALTSAVLDSRKALGKRAWEKQRVFDPDGVRIAFTGGVDCNDHQRIYAVLDKVHAQLPNLILMHGATPTGAERIAACW ARDRGVPQDPYRPDWNRHKKAAPFKRNDAMLEKMPRGVIVFPGTGIQDNLADKARKMGIRVWDFRNRRRD >Mature_309_residues ATDQDDGHEAQPGSTAYLLQEMQLYGCRPFEDEPDHRPLPDDRIAGGAVAEMFDALVSCLIDTRIEPDLEDLAWGIVNVF HRAGERIERELDDNEQAQKRLQREQDGSEVKSVELERKIAEGITTIERRDTMEFFRDAAADQFRIHIRKPWLPRSGAMVN HKALTSAVLDSRKALGKRAWEKQRVFDPDGVRIAFTGGVDCNDHQRIYAVLDKVHAQLPNLILMHGATPTGAERIAACWA RDRGVPQDPYRPDWNRHKKAAPFKRNDAMLEKMPRGVIVFPGTGIQDNLADKARKMGIRVWDFRNRRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35398; Mature: 35267
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDQDDGHEAQPGSTAYLLQEMQLYGCRPFEDEPDHRPLPDDRIAGGAVAEMFDALVSC CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LIDTRIEPDLEDLAWGIVNVFHRAGERIERELDDNEQAQKRLQREQDGSEVKSVELERKI HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH AEGITTIERRDTMEFFRDAAADQFRIHIRKPWLPRSGAMVNHKALTSAVLDSRKALGKRA HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH WEKQRVFDPDGVRIAFTGGVDCNDHQRIYAVLDKVHAQLPNLILMHGATPTGAERIAACW HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH ARDRGVPQDPYRPDWNRHKKAAPFKRNDAMLEKMPRGVIVFPGTGIQDNLADKARKMGIR HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCE VWDFRNRRRD EEECHHCCCC >Mature Secondary Structure ATDQDDGHEAQPGSTAYLLQEMQLYGCRPFEDEPDHRPLPDDRIAGGAVAEMFDALVSC CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LIDTRIEPDLEDLAWGIVNVFHRAGERIERELDDNEQAQKRLQREQDGSEVKSVELERKI HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH AEGITTIERRDTMEFFRDAAADQFRIHIRKPWLPRSGAMVNHKALTSAVLDSRKALGKRA HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH WEKQRVFDPDGVRIAFTGGVDCNDHQRIYAVLDKVHAQLPNLILMHGATPTGAERIAACW HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH ARDRGVPQDPYRPDWNRHKKAAPFKRNDAMLEKMPRGVIVFPGTGIQDNLADKARKMGIR HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCE VWDFRNRRRD EEECHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA