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The map label for this gene is traF [H]

Identifier: 103488100

GI number: 103488100

Start: 2763499

End: 2764098

Strand: Reverse

Name: traF [H]

Synonym: Sala_2622

Alternate gene names: 103488100

Gene position: 2764098-2763499 (Counterclockwise)

Preceding gene: 103488101

Following gene: 103488099

Centisome position: 82.63

GC content: 70.0

Gene sequence:

>600_bases
ATGAGCCGCCGTCCGCTCTCCCGCTTCGTGCCGCACATCGCCGGCGCCGTAATTGGTTTCACGCTGGTCGCGGCAGTTCT
GCCGCTGCCCAAGCTGTTGCTCTGGAACGCCAGCGCCAGCGCGCCGATCGGGCTTTACCGCGTCCATCCGTTTGCCCGGC
CTGCGGTCGGCGACATGGTCGCCATCATGCCGCCGCCCGCGTTCGCCCGGTTCATGGCCGAGCGCCATTATCTCCCTGCC
GGCGTGCCGCTGCTCAAGCATGTCGCCGCGCGTCCGGGCGCGCTGATCTGCCGCCGCGATAGGACGGTGACGATCGACGG
GCGCACCGTCGCGGTCGCGCGCGCGTCCGACGGTCATGGCCGACCGTTGCCGGTCTGGCGCGGCTGCCGCGTCCTCAGGA
CCGACCAACTGTTCCTGCTCAATGCTGCGCCCGACAGCCTCGACGGGCGCTATTTCGGGCCGATTCCAGCCTCCGGCCTG
ATCGGCCGCGCCACCCCGATCCTCACCCGCGACACACCGAATGCGCCGCTGCGCTGGCGCTCCGGCTGCGCGCGGGGTGC
CCCTCTCACCAGCGAAGAAGGAGTCATCTTATGCAGATAG

Upstream 100 bases:

>100_bases
ATTGGCGGCATGTCCATAACCGGCTGAGCGCAGGCGAACCTGCACGCGTCTATACGGCGGAGCGCCATCAGGCATGGCTC
AAGCGCAAGGCGCTGGGTCA

Downstream 100 bases:

>100_bases
GTTGCTTCACCCAAGACGGCGACGGGTTCGTCGGCCGTCTGCGCACGCTCACGCTCGGTGTCGCGCTGCGGCTCGTGCCG
ACCGGCTTCACCGGGCAGGG

Product: conjugal transfer protein traF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSRRPLSRFVPHIAGAVIGFTLVAAVLPLPKLLLWNASASAPIGLYRVHPFARPAVGDMVAIMPPPAFARFMAERHYLPA
GVPLLKHVAARPGALICRRDRTVTIDGRTVAVARASDGHGRPLPVWRGCRVLRTDQLFLLNAAPDSLDGRYFGPIPASGL
IGRATPILTRDTPNAPLRWRSGCARGAPLTSEEGVILCR

Sequences:

>Translated_199_residues
MSRRPLSRFVPHIAGAVIGFTLVAAVLPLPKLLLWNASASAPIGLYRVHPFARPAVGDMVAIMPPPAFARFMAERHYLPA
GVPLLKHVAARPGALICRRDRTVTIDGRTVAVARASDGHGRPLPVWRGCRVLRTDQLFLLNAAPDSLDGRYFGPIPASGL
IGRATPILTRDTPNAPLRWRSGCARGAPLTSEEGVILCR
>Mature_198_residues
SRRPLSRFVPHIAGAVIGFTLVAAVLPLPKLLLWNASASAPIGLYRVHPFARPAVGDMVAIMPPPAFARFMAERHYLPAG
VPLLKHVAARPGALICRRDRTVTIDGRTVAVARASDGHGRPLPVWRGCRVLRTDQLFLLNAAPDSLDGRYFGPIPASGLI
GRATPILTRDTPNAPLRWRSGCARGAPLTSEEGVILCR

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 21444; Mature: 21312

Theoretical pI: Translated: 11.94; Mature: 11.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRPLSRFVPHIAGAVIGFTLVAAVLPLPKLLLWNASASAPIGLYRVHPFARPAVGDMV
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCCCCEE
AIMPPPAFARFMAERHYLPAGVPLLKHVAARPGALICRRDRTVTIDGRTVAVARASDGHG
EECCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCEEEECCCEEEEEECCCCCC
RPLPVWRGCRVLRTDQLFLLNAAPDSLDGRYFGPIPASGLIGRATPILTRDTPNAPLRWR
CCCCHHHCCEEEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCC
SGCARGAPLTSEEGVILCR
CCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
SRRPLSRFVPHIAGAVIGFTLVAAVLPLPKLLLWNASASAPIGLYRVHPFARPAVGDMV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCCCCEE
AIMPPPAFARFMAERHYLPAGVPLLKHVAARPGALICRRDRTVTIDGRTVAVARASDGHG
EECCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCEEEECCCEEEEEECCCCCC
RPLPVWRGCRVLRTDQLFLLNAAPDSLDGRYFGPIPASGLIGRATPILTRDTPNAPLRWR
CCCCHHHCCEEEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCC
SGCARGAPLTSEEGVILCR
CCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]