| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488080
Identifier: 103488080
GI number: 103488080
Start: 2743790
End: 2745553
Strand: Reverse
Name: 103488080
Synonym: Sala_2602
Alternate gene names: NA
Gene position: 2745553-2743790 (Counterclockwise)
Preceding gene: 103488081
Following gene: 103488072
Centisome position: 82.08
GC content: 61.11
Gene sequence:
>1764_bases GTGAGCGCCCTTCGCTTTCTCCTGCGCATGCGAAAGGGGCGGCAATCCCCGCTGCGGATCAGCCTCGTTCAATCTCCATC CGTTTCTTCCGATGATGAGGCTCTATTATGGTGCAGCGATCCAGCAAGGGTGCTGCACCTTCCGGCCGATCAGGGCATGA TCATCGGCCGCCTGTTCTCTCGCGAGACATTTTCAGCCATTGAGGAGATGACCGCTGCCGAAGCAGCCAAGCTCATCGAT TCAGGCGGTGCCGCACTGATCAAGGACTATTGGGGGGCGTATGTTGCCGTCCATCAAAGCGATGCTGTCGGCGGCTATTC AATCACAAGGGCCCCATCGGGCTTTTTGCCATGCTACCAGGTTGAAACGCGCACGCATCATATCTGGGCCTCGGATCTGC ATACGCTGTCCGCGGCGGGGATTGCCGTGTCGAAGGTGGATTGGGAGCGCCTCTATGAGCATCTCCAATGGCCTGACGTG CGCCGCCGGCATAGTTGCATCGATGGCGTGTCGGAACTGGCACCCGGCAGCGCAAGGGCAGTATCCGGTGATGCACCCAA AGATCAAATGCTCTGGGAGCCGTGGGCATTCACACACCCGGACGTGGCGATCGATCCGGATCACGCCGTCACGCGCCTGC GCGACACCGTCTTTGCGTCGGTCGGTGCTCTCGCGTCAGACTATCAAAATATCATCGTGGGCGTGTCCGGCGGTCTGGAT TCGTCGATCGTCTGCGCCGCACTGACACGGGGAAGACACCGCTTCAGTTGTCTGACCATGGCGACCACTGATGCCAGCGG TGACGAACGCCGCTATGCCGCCAGCGTCGCGGCCGTGGCCGGAGTCCCTCTCGCGGCGCATCAATATGCCGTCGACAATA TCGACCTCAGCCGTTCATCCGCAGTGCATCTGCCGCGCCCAGTTGGGCGCCCGTTTTTGCAGGAGTTAGACCGGGCTTAC GCTGCGGAAATATGCAAGACTGGTGCGGATGCGATATTTACAGGGAATGGCGGGGACAACGTCTTCTGCTTTCTCCATTC CGCAGCCCCAGTTGTTGATCGTTTCCGCCAAGAGAGAGGCCTGAAGCCAGCCTGGAACACGCTGCTGGATATGTGCCGGG TGACCCAATGCGACATCCCGACGATGGCCCGCGCGGCCTTTAAGCTGTCGCGCATCCGGCCGTCTCTCGTGGCGTCTGAA CCCGACCTGACACTCCTCAATGCCGCGCGTGCCGTCCTTGCGCAATCCGCACCGCTTACGCCCTATATGGATAGGGTGGC CGGACGGTTTCCCGGCAAACTGGCGCACGTCCGCTTGCTTCAGCGCATCCAGAACTTCGTGGAAGGGCAGGATCGCACCA CCTTTCCTCCCATGTTTCCGGTGCTTCTCGCTCAGCCCATCGTCGAGACCTGTCTGCGCATATCGAGCTGGCAGTGGTGC GAAGGCGGCATCAACCGATCGGTCGCGCGGCGGGCATTTGGCGGCTTTCTCCCCCGGCAGGTGGTCCATAGGACGTCTAA GGCTGGCCCTGACAGCGTAACGGCTGCCGCCTTCGAATCAGGTAGGCCAAAGCTTCGCGAACTGTTGCTCGATGGCCTTC TCCGCCAAAATCGGATCATCGATGCCATGGCCGTGGAGCAGGCTCTGTCCAGCGCGCGGACAAGCCGCGACCAACTCCTC TACCGTATTCTTGATCTTGCCGACGCAGAGGCTTGGGCGCGGTCACGGTCCGCCGGAAGCAGCGATAGCGCATTGGGCCG ATAA
Upstream 100 bases:
>100_bases GGGTTATTCCTTTCGCCGCGCATAGCTGGGCACAGATTGGCGACGTCGTTCTCAACGACTCGCCCGAGGAGGTCGCGCGC TTTACGCAGATCTTTGTCCT
Downstream 100 bases:
>100_bases ATCCGGGGCGCCCCGCATGGTCTGCCATCGGGCATACTGGGCACGCTTGCCCGGCGAACAATCCATTCGCCTCATCAACC AGAATTCAAACCAATCGACA
Product: asparagine synthase
Products: NA
Alternate protein names: Asparagine Synthetase
Number of amino acids: Translated: 587; Mature: 586
Protein sequence:
>587_residues MSALRFLLRMRKGRQSPLRISLVQSPSVSSDDEALLWCSDPARVLHLPADQGMIIGRLFSRETFSAIEEMTAAEAAKLID SGGAALIKDYWGAYVAVHQSDAVGGYSITRAPSGFLPCYQVETRTHHIWASDLHTLSAAGIAVSKVDWERLYEHLQWPDV RRRHSCIDGVSELAPGSARAVSGDAPKDQMLWEPWAFTHPDVAIDPDHAVTRLRDTVFASVGALASDYQNIIVGVSGGLD SSIVCAALTRGRHRFSCLTMATTDASGDERRYAASVAAVAGVPLAAHQYAVDNIDLSRSSAVHLPRPVGRPFLQELDRAY AAEICKTGADAIFTGNGGDNVFCFLHSAAPVVDRFRQERGLKPAWNTLLDMCRVTQCDIPTMARAAFKLSRIRPSLVASE PDLTLLNAARAVLAQSAPLTPYMDRVAGRFPGKLAHVRLLQRIQNFVEGQDRTTFPPMFPVLLAQPIVETCLRISSWQWC EGGINRSVARRAFGGFLPRQVVHRTSKAGPDSVTAAAFESGRPKLRELLLDGLLRQNRIIDAMAVEQALSSARTSRDQLL YRILDLADAEAWARSRSAGSSDSALGR
Sequences:
>Translated_587_residues MSALRFLLRMRKGRQSPLRISLVQSPSVSSDDEALLWCSDPARVLHLPADQGMIIGRLFSRETFSAIEEMTAAEAAKLID SGGAALIKDYWGAYVAVHQSDAVGGYSITRAPSGFLPCYQVETRTHHIWASDLHTLSAAGIAVSKVDWERLYEHLQWPDV RRRHSCIDGVSELAPGSARAVSGDAPKDQMLWEPWAFTHPDVAIDPDHAVTRLRDTVFASVGALASDYQNIIVGVSGGLD SSIVCAALTRGRHRFSCLTMATTDASGDERRYAASVAAVAGVPLAAHQYAVDNIDLSRSSAVHLPRPVGRPFLQELDRAY AAEICKTGADAIFTGNGGDNVFCFLHSAAPVVDRFRQERGLKPAWNTLLDMCRVTQCDIPTMARAAFKLSRIRPSLVASE PDLTLLNAARAVLAQSAPLTPYMDRVAGRFPGKLAHVRLLQRIQNFVEGQDRTTFPPMFPVLLAQPIVETCLRISSWQWC EGGINRSVARRAFGGFLPRQVVHRTSKAGPDSVTAAAFESGRPKLRELLLDGLLRQNRIIDAMAVEQALSSARTSRDQLL YRILDLADAEAWARSRSAGSSDSALGR >Mature_586_residues SALRFLLRMRKGRQSPLRISLVQSPSVSSDDEALLWCSDPARVLHLPADQGMIIGRLFSRETFSAIEEMTAAEAAKLIDS GGAALIKDYWGAYVAVHQSDAVGGYSITRAPSGFLPCYQVETRTHHIWASDLHTLSAAGIAVSKVDWERLYEHLQWPDVR RRHSCIDGVSELAPGSARAVSGDAPKDQMLWEPWAFTHPDVAIDPDHAVTRLRDTVFASVGALASDYQNIIVGVSGGLDS SIVCAALTRGRHRFSCLTMATTDASGDERRYAASVAAVAGVPLAAHQYAVDNIDLSRSSAVHLPRPVGRPFLQELDRAYA AEICKTGADAIFTGNGGDNVFCFLHSAAPVVDRFRQERGLKPAWNTLLDMCRVTQCDIPTMARAAFKLSRIRPSLVASEP DLTLLNAARAVLAQSAPLTPYMDRVAGRFPGKLAHVRLLQRIQNFVEGQDRTTFPPMFPVLLAQPIVETCLRISSWQWCE GGINRSVARRAFGGFLPRQVVHRTSKAGPDSVTAAAFESGRPKLRELLLDGLLRQNRIIDAMAVEQALSSARTSRDQLLY RILDLADAEAWARSRSAGSSDSALGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64091; Mature: 63959
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALRFLLRMRKGRQSPLRISLVQSPSVSSDDEALLWCSDPARVLHLPADQGMIIGRLFS CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHH RETFSAIEEMTAAEAAKLIDSGGAALIKDYWGAYVAVHQSDAVGGYSITRAPSGFLPCYQ HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCCCEE VETRTHHIWASDLHTLSAAGIAVSKVDWERLYEHLQWPDVRRRHSCIDGVSELAPGSARA ECCCCEEEEHHHHHHHHHCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC VSGDAPKDQMLWEPWAFTHPDVAIDPDHAVTRLRDTVFASVGALASDYQNIIVGVSGGLD CCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC SSIVCAALTRGRHRFSCLTMATTDASGDERRYAASVAAVAGVPLAAHQYAVDNIDLSRSS HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC AVHLPRPVGRPFLQELDRAYAAEICKTGADAIFTGNGGDNVFCFLHSAAPVVDRFRQERG CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHCC LKPAWNTLLDMCRVTQCDIPTMARAAFKLSRIRPSLVASEPDLTLLNAARAVLAQSAPLT CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCC PYMDRVAGRFPGKLAHVRLLQRIQNFVEGQDRTTFPPMFPVLLAQPIVETCLRISSWQWC HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH EGGINRSVARRAFGGFLPRQVVHRTSKAGPDSVTAAAFESGRPKLRELLLDGLLRQNRII HCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH DAMAVEQALSSARTSRDQLLYRILDLADAEAWARSRSAGSSDSALGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SALRFLLRMRKGRQSPLRISLVQSPSVSSDDEALLWCSDPARVLHLPADQGMIIGRLFS HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHH RETFSAIEEMTAAEAAKLIDSGGAALIKDYWGAYVAVHQSDAVGGYSITRAPSGFLPCYQ HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCCCEE VETRTHHIWASDLHTLSAAGIAVSKVDWERLYEHLQWPDVRRRHSCIDGVSELAPGSARA ECCCCEEEEHHHHHHHHHCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC VSGDAPKDQMLWEPWAFTHPDVAIDPDHAVTRLRDTVFASVGALASDYQNIIVGVSGGLD CCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC SSIVCAALTRGRHRFSCLTMATTDASGDERRYAASVAAVAGVPLAAHQYAVDNIDLSRSS HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC AVHLPRPVGRPFLQELDRAYAAEICKTGADAIFTGNGGDNVFCFLHSAAPVVDRFRQERG CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHCC LKPAWNTLLDMCRVTQCDIPTMARAAFKLSRIRPSLVASEPDLTLLNAARAVLAQSAPLT CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCCCC PYMDRVAGRFPGKLAHVRLLQRIQNFVEGQDRTTFPPMFPVLLAQPIVETCLRISSWQWC HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH EGGINRSVARRAFGGFLPRQVVHRTSKAGPDSVTAAAFESGRPKLRELLLDGLLRQNRII HCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH DAMAVEQALSSARTSRDQLLYRILDLADAEAWARSRSAGSSDSALGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA