| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488081
Identifier: 103488081
GI number: 103488081
Start: 2745550
End: 2746209
Strand: Reverse
Name: 103488081
Synonym: Sala_2603
Alternate gene names: NA
Gene position: 2746209-2745550 (Counterclockwise)
Preceding gene: 103488082
Following gene: 103488080
Centisome position: 82.09
GC content: 58.94
Gene sequence:
>660_bases ATGCCTGCAATGCACTATAGGACGGCACCCGGCATATTCTACTGCCGCGCGGGGTCACGCGTAATTTTTCTGGACATGAA TAGGGATCGCTATTTCCAGTTAGGCGCAGATCTCGAGGCCAGTTTCCTGTCCGTCATCGAAGGACATTCCGCACCAACGC TGGCCGTTTCGGCCCTGACCGAGAGGGGCATCCTGTGTTCGAAAGACGGCTACGAAGTGAGGCAGCAGGTCGAATTGCCT GTGCCGTCACGGGCAGCGGATGCGCTGAAGGGCGAGACAACCCTGGGCGAAACGCTGAGGGCACTCCTTGCCGAAACCCG GATCAGGAAACGGCTCGACCGGCAGGGACTGGCATCGGTCATTTCTTCCCTGCGCAGCGAGAAAACTAGGGCGGTCACTG CTTCAATCGATCATCGTATGTCGGCCAGAACAATCAGGGCCTTCGAACTGGCGAAGCTCGTCAGGACGCCGGCAAACCGA TGCCTGTCGCGCTCGATCGCTCTTGTTCAACGGCTCGCCGCACAAGGATGTGCAGCCCATCTCGTGATAGGGGTCAGGGT TATTCCTTTCGCCGCGCATAGCTGGGCACAGATTGGCGACGTCGTTCTCAACGACTCGCCCGAGGAGGTCGCGCGCTTTA CGCAGATCTTTGTCCTGTGA
Upstream 100 bases:
>100_bases GATCAGGATGTCGGCGGCGGCCGGCAGCAGTTCCTCACCGGAATCGCGCAGGACTGACTGGAATAGGGCGTGCGATTTCT TCGCACGCCCTTTCTAGCGG
Downstream 100 bases:
>100_bases GCGCCCTTCGCTTTCTCCTGCGCATGCGAAAGGGGCGGCAATCCCCGCTGCGGATCAGCCTCGTTCAATCTCCATCCGTT TCTTCCGATGATGAGGCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MPAMHYRTAPGIFYCRAGSRVIFLDMNRDRYFQLGADLEASFLSVIEGHSAPTLAVSALTERGILCSKDGYEVRQQVELP VPSRAADALKGETTLGETLRALLAETRIRKRLDRQGLASVISSLRSEKTRAVTASIDHRMSARTIRAFELAKLVRTPANR CLSRSIALVQRLAAQGCAAHLVIGVRVIPFAAHSWAQIGDVVLNDSPEEVARFTQIFVL
Sequences:
>Translated_219_residues MPAMHYRTAPGIFYCRAGSRVIFLDMNRDRYFQLGADLEASFLSVIEGHSAPTLAVSALTERGILCSKDGYEVRQQVELP VPSRAADALKGETTLGETLRALLAETRIRKRLDRQGLASVISSLRSEKTRAVTASIDHRMSARTIRAFELAKLVRTPANR CLSRSIALVQRLAAQGCAAHLVIGVRVIPFAAHSWAQIGDVVLNDSPEEVARFTQIFVL >Mature_218_residues PAMHYRTAPGIFYCRAGSRVIFLDMNRDRYFQLGADLEASFLSVIEGHSAPTLAVSALTERGILCSKDGYEVRQQVELPV PSRAADALKGETTLGETLRALLAETRIRKRLDRQGLASVISSLRSEKTRAVTASIDHRMSARTIRAFELAKLVRTPANRC LSRSIALVQRLAAQGCAAHLVIGVRVIPFAAHSWAQIGDVVLNDSPEEVARFTQIFVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24088; Mature: 23957
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAMHYRTAPGIFYCRAGSRVIFLDMNRDRYFQLGADLEASFLSVIEGHSAPTLAVSALT CCCCCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHH ERGILCSKDGYEVRQQVELPVPSRAADALKGETTLGETLRALLAETRIRKRLDRQGLASV HCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSLRSEKTRAVTASIDHRMSARTIRAFELAKLVRTPANRCLSRSIALVQRLAAQGCAAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LVIGVRVIPFAAHSWAQIGDVVLNDSPEEVARFTQIFVL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure PAMHYRTAPGIFYCRAGSRVIFLDMNRDRYFQLGADLEASFLSVIEGHSAPTLAVSALT CCCCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHH ERGILCSKDGYEVRQQVELPVPSRAADALKGETTLGETLRALLAETRIRKRLDRQGLASV HCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSLRSEKTRAVTASIDHRMSARTIRAFELAKLVRTPANRCLSRSIALVQRLAAQGCAAH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LVIGVRVIPFAAHSWAQIGDVVLNDSPEEVARFTQIFVL HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA