| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488042
Identifier: 103488042
GI number: 103488042
Start: 2703483
End: 2704052
Strand: Reverse
Name: 103488042
Synonym: Sala_2564
Alternate gene names: NA
Gene position: 2704052-2703483 (Counterclockwise)
Preceding gene: 103488049
Following gene: 103488040
Centisome position: 80.83
GC content: 63.68
Gene sequence:
>570_bases TTGGCGCAAGGCTCCTCAGTCACGACCGATTGGTGCGACAGCATTGCTGATCCTGCCGTCGTCCTGCGCGAGCACGGCTT GCTGGCCGACCTCATCATCATGAGTTTGCCGAGGGAGGGCGATGTGGCGCAGGCCGATCCCGTCGATCTCGCTGCCGCCA CAGGCACTTCCATTCTTCGCTTGGGTACTGCAACCTCGCGAGAGGCCTTTCGACGCGTGCTGCTCGGTTGGAAGGATTGC CGGGAGTCGCGCTGCGCCTTGCGGGCAGCCTTGCCCTTCCTGCGGCGGGCCGAAACCATCCTGATCGCAGGCGTGGGCGA CGAAGCGTCACCGGAGTGCCTCAGCGCCGTGCAGCGTTATCTTTGCGCCCGCGATATGAACGCACAACACGACCACATTC CCGACAATGGCAAAGGTGCGGCTGCATCGATGACCGAGGTCGCCCGACGCGAGGGCTATGGCCTGCTGGTGGCAGGCGCT CGCGCCCAAGGCCGGTGGAAAGAGCGGATAGTCGGTGGCGCCACCGAGGAACTGCTGAGAACCGATGTGAACTGGCTTTT GGCAAATTAG
Upstream 100 bases:
>100_bases TGTCCTTCGCTGATGCCCTCGTCCGCGGTCCTTTTCAATCGATGGCTCGGGAAGAAGAAATGCGTCAAGCGATCGCGCTT CGCGAGCAACATTCGATCGC
Downstream 100 bases:
>100_bases ATATGCGGCTCGCTTTTCCGTCACGATAGGGTCTGTGCTCCGGCATGGCGGAGCAAGCTGCGGTAGGTGCCACCGGCGGA TGGGCGCCTCAGACTAGGAG
Product: universal stress protein, UspA
Products: NA
Alternate protein names: Universal Stress Protein Family; UspA Domain-Containing Protein
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MAQGSSVTTDWCDSIADPAVVLREHGLLADLIIMSLPREGDVAQADPVDLAAATGTSILRLGTATSREAFRRVLLGWKDC RESRCALRAALPFLRRAETILIAGVGDEASPECLSAVQRYLCARDMNAQHDHIPDNGKGAAASMTEVARREGYGLLVAGA RAQGRWKERIVGGATEELLRTDVNWLLAN
Sequences:
>Translated_189_residues MAQGSSVTTDWCDSIADPAVVLREHGLLADLIIMSLPREGDVAQADPVDLAAATGTSILRLGTATSREAFRRVLLGWKDC RESRCALRAALPFLRRAETILIAGVGDEASPECLSAVQRYLCARDMNAQHDHIPDNGKGAAASMTEVARREGYGLLVAGA RAQGRWKERIVGGATEELLRTDVNWLLAN >Mature_188_residues AQGSSVTTDWCDSIADPAVVLREHGLLADLIIMSLPREGDVAQADPVDLAAATGTSILRLGTATSREAFRRVLLGWKDCR ESRCALRAALPFLRRAETILIAGVGDEASPECLSAVQRYLCARDMNAQHDHIPDNGKGAAASMTEVARREGYGLLVAGAR AQGRWKERIVGGATEELLRTDVNWLLAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20353; Mature: 20222
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQGSSVTTDWCDSIADPAVVLREHGLLADLIIMSLPREGDVAQADPVDLAAATGTSILR CCCCCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHEE LGTATSREAFRRVLLGWKDCRESRCALRAALPFLRRAETILIAGVGDEASPECLSAVQRY ECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH LCARDMNAQHDHIPDNGKGAAASMTEVARREGYGLLVAGARAQGRWKERIVGGATEELLR HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCHHHHHHH TDVNWLLAN HHHHHHCCC >Mature Secondary Structure AQGSSVTTDWCDSIADPAVVLREHGLLADLIIMSLPREGDVAQADPVDLAAATGTSILR CCCCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHEE LGTATSREAFRRVLLGWKDCRESRCALRAALPFLRRAETILIAGVGDEASPECLSAVQRY ECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH LCARDMNAQHDHIPDNGKGAAASMTEVARREGYGLLVAGARAQGRWKERIVGGATEELLR HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCHHHHHHH TDVNWLLAN HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA