| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488012
Identifier: 103488012
GI number: 103488012
Start: 2671577
End: 2673289
Strand: Reverse
Name: 103488012
Synonym: Sala_2533
Alternate gene names: NA
Gene position: 2673289-2671577 (Counterclockwise)
Preceding gene: 103488013
Following gene: 103488000
Centisome position: 79.91
GC content: 60.42
Gene sequence:
>1713_bases ATGAAAGGCGGGTTTCGAATTGAGGTCGAGATGTCGACCAACCGTCAGGCTCCGGAGCAGCAGGGACCGCCGACTTTCGA AATATCTGGCGTGAGGATATGGACCGCCGAACCGGCAATCGCAGTGCCTCCTCGGACCGTCATCATCGGTCATCTTTTTA CGAGAGGCCCACCCAGCCGCCGGGTCGAGGCTTTTGAAGTCGGCGAGGGCGATGGTCTTGCGGCCAATGATGCGCAACGG CTGCTGAGGCAATATTGGGGCGGTTACGTCATGGTCCATGCCGACCCAGGGGGTGCGGTACGGATATTTCGCGATCCATC GGGACTTCTTCCTTGCTATGTCCGCCGCGATCGCGGCCGCGTGACGCTTGCAGGATCGATTACTGACCTCGCTAACCCCG CCCCTGGTTCGGCAAATCTCGATGAGATCGCTCGCATCCTGGCGGGTGGCGATCTTCGGGGGCGACGGACATGTGTATCG GACGTCGAAGAACTGATCGCCAGCGAATGCCTGGTCATCGACAAGGGTGAATTACGGACCGAGCAATATTGGTCGCCTTG GGATCATGTCGCCAGTTCCGGCCTTGGCGCCGACGATATGGCTGACGCATTGAGGCGCACGATAGCGGACTGCGTCGGAG CGTGGGCTACCTGCTTCCCCTCGATCATGGTCGGCGTGTCGGGCGGGCTCGACTCCTCGATTGTTGCGGCCTCGGCAGCG AATATGGCCAAGAGGCTGACCTGTCTGAATCTGGTGAGCCCCGATTTCGATGGAGATGAGCGCAGGTACGCCCGGGCGCT TGCAGAGTCGATCGGCACGCTGCTGATCGAGGAGCATCGCGAGCTGCAAGACATTGACGTCACCGTCTCGGCAGCGCCAC ATCATCCTTGGCCCGTTGCTCCGCTCTACAAGCAGACCAATGAGGCGATCCATCGGCGCTTGCTCGGCCAACTACCCGTC GATGCCTTCTTTTCCGGCAATGGCGGCGACGGCATCCTTTGTGGTGTACGAAGCGCTGTGCCCTTTATTGATCGGCTTCT GGCCGAAGGTCCGCGGCCATCCCTCGCGTCCACCCTTTACGATCTCACCCTGTTGACCGGAGCCGATACCAAGACAGTCT TGAAGCACGGCTGGGACCGCTATCGACGAAATCGAGGGCGGCATAGTCCTCTCATCAATCTTGCGGGCCTGGGAAAGGAA GTCGGACGAAAGATCAGGGCGGAGGGCGCCTCCCACCCCTGGCTCGATGCGCCTGACGACATTCTTCCGGGGAAGACTGT ACACGCCGCATTTCTGATGCGAGCGCAGAAGGGCATCGAGCTTTATCCGCGCGCGACGATGCCTCCCCACATTGCCCCGC TGATGTCGCAGCCGATCATCGAAGCCTGTCTTGCGATCCCGACTTGGGATTGGATCGCCGGAGGACAGAATCGCGCTGTG GCGAGAAAAGCATTCGAGGGATGTTTACCGGAGTTGATCACCGCGCGAACACAAAAGGGCGGACCTGGCGACTTTCACCT GTCGATCTATCGCGCCCACCGATCTGCGCTCCACGATCGCCTACGCGGCGGGATCCTTGCGGAGTCGGGGATCTTGGATC TTGCTCTTCTTGACACACCCGAAGACCCAAGCTGGCGCGGCACGGATCGCATCGACAGGATCCTCACATTCGTCGCCGCA GAGAATTGGGCCCGATATTGGGAGGGAAATTGA
Upstream 100 bases:
>100_bases CCATGCCCTTCGCCGCCCATAGTTGGGTTCAGGTCGGCGATACCGTCCTGACCGACTCCTTGGACATGGTTCTCCACTAT CGACCGATCTTCGCCGTCTG
Downstream 100 bases:
>100_bases TCATGAGAACAAGAATGTGATGCGCGTTCAATTCGAACCGCAATTTGGAGGAAGAGCAATGGAAGACAGAGACGCCAAGT TGGAGCTTTTGGACCTTGGT
Product: asparagine synthase
Products: NA
Alternate protein names: Asparagine Synthetase
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MKGGFRIEVEMSTNRQAPEQQGPPTFEISGVRIWTAEPAIAVPPRTVIIGHLFTRGPPSRRVEAFEVGEGDGLAANDAQR LLRQYWGGYVMVHADPGGAVRIFRDPSGLLPCYVRRDRGRVTLAGSITDLANPAPGSANLDEIARILAGGDLRGRRTCVS DVEELIASECLVIDKGELRTEQYWSPWDHVASSGLGADDMADALRRTIADCVGAWATCFPSIMVGVSGGLDSSIVAASAA NMAKRLTCLNLVSPDFDGDERRYARALAESIGTLLIEEHRELQDIDVTVSAAPHHPWPVAPLYKQTNEAIHRRLLGQLPV DAFFSGNGGDGILCGVRSAVPFIDRLLAEGPRPSLASTLYDLTLLTGADTKTVLKHGWDRYRRNRGRHSPLINLAGLGKE VGRKIRAEGASHPWLDAPDDILPGKTVHAAFLMRAQKGIELYPRATMPPHIAPLMSQPIIEACLAIPTWDWIAGGQNRAV ARKAFEGCLPELITARTQKGGPGDFHLSIYRAHRSALHDRLRGGILAESGILDLALLDTPEDPSWRGTDRIDRILTFVAA ENWARYWEGN
Sequences:
>Translated_570_residues MKGGFRIEVEMSTNRQAPEQQGPPTFEISGVRIWTAEPAIAVPPRTVIIGHLFTRGPPSRRVEAFEVGEGDGLAANDAQR LLRQYWGGYVMVHADPGGAVRIFRDPSGLLPCYVRRDRGRVTLAGSITDLANPAPGSANLDEIARILAGGDLRGRRTCVS DVEELIASECLVIDKGELRTEQYWSPWDHVASSGLGADDMADALRRTIADCVGAWATCFPSIMVGVSGGLDSSIVAASAA NMAKRLTCLNLVSPDFDGDERRYARALAESIGTLLIEEHRELQDIDVTVSAAPHHPWPVAPLYKQTNEAIHRRLLGQLPV DAFFSGNGGDGILCGVRSAVPFIDRLLAEGPRPSLASTLYDLTLLTGADTKTVLKHGWDRYRRNRGRHSPLINLAGLGKE VGRKIRAEGASHPWLDAPDDILPGKTVHAAFLMRAQKGIELYPRATMPPHIAPLMSQPIIEACLAIPTWDWIAGGQNRAV ARKAFEGCLPELITARTQKGGPGDFHLSIYRAHRSALHDRLRGGILAESGILDLALLDTPEDPSWRGTDRIDRILTFVAA ENWARYWEGN >Mature_570_residues MKGGFRIEVEMSTNRQAPEQQGPPTFEISGVRIWTAEPAIAVPPRTVIIGHLFTRGPPSRRVEAFEVGEGDGLAANDAQR LLRQYWGGYVMVHADPGGAVRIFRDPSGLLPCYVRRDRGRVTLAGSITDLANPAPGSANLDEIARILAGGDLRGRRTCVS DVEELIASECLVIDKGELRTEQYWSPWDHVASSGLGADDMADALRRTIADCVGAWATCFPSIMVGVSGGLDSSIVAASAA NMAKRLTCLNLVSPDFDGDERRYARALAESIGTLLIEEHRELQDIDVTVSAAPHHPWPVAPLYKQTNEAIHRRLLGQLPV DAFFSGNGGDGILCGVRSAVPFIDRLLAEGPRPSLASTLYDLTLLTGADTKTVLKHGWDRYRRNRGRHSPLINLAGLGKE VGRKIRAEGASHPWLDAPDDILPGKTVHAAFLMRAQKGIELYPRATMPPHIAPLMSQPIIEACLAIPTWDWIAGGQNRAV ARKAFEGCLPELITARTQKGGPGDFHLSIYRAHRSALHDRLRGGILAESGILDLALLDTPEDPSWRGTDRIDRILTFVAA ENWARYWEGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62120; Mature: 62120
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGGFRIEVEMSTNRQAPEQQGPPTFEISGVRIWTAEPAIAVPPRTVIIGHLFTRGPPSR CCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCEECCCCCEEEEHHHHCCCCCC RVEAFEVGEGDGLAANDAQRLLRQYWGGYVMVHADPGGAVRIFRDPSGLLPCYVRRDRGR CEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCC VTLAGSITDLANPAPGSANLDEIARILAGGDLRGRRTCVSDVEELIASECLVIDKGELRT EEEEECHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCH EQYWSPWDHVASSGLGADDMADALRRTIADCVGAWATCFPSIMVGVSGGLDSSIVAASAA HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NMAKRLTCLNLVSPDFDGDERRYARALAESIGTLLIEEHRELQDIDVTVSAAPHHPWPVA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC PLYKQTNEAIHRRLLGQLPVDAFFSGNGGDGILCGVRSAVPFIDRLLAEGPRPSLASTLY HHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH DLTLLTGADTKTVLKHGWDRYRRNRGRHSPLINLAGLGKEVGRKIRAEGASHPWLDAPDD HHHEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHCCHHHHHHHHHCCCCCCCCCCCCC ILPGKTVHAAFLMRAQKGIELYPRATMPPHIAPLMSQPIIEACLAIPTWDWIAGGQNRAV CCCCCHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHH ARKAFEGCLPELITARTQKGGPGDFHLSIYRAHRSALHDRLRGGILAESGILDLALLDTP HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC EDPSWRGTDRIDRILTFVAAENWARYWEGN CCCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKGGFRIEVEMSTNRQAPEQQGPPTFEISGVRIWTAEPAIAVPPRTVIIGHLFTRGPPSR CCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCEECCCCCEEEEHHHHCCCCCC RVEAFEVGEGDGLAANDAQRLLRQYWGGYVMVHADPGGAVRIFRDPSGLLPCYVRRDRGR CEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCC VTLAGSITDLANPAPGSANLDEIARILAGGDLRGRRTCVSDVEELIASECLVIDKGELRT EEEEECHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCH EQYWSPWDHVASSGLGADDMADALRRTIADCVGAWATCFPSIMVGVSGGLDSSIVAASAA HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NMAKRLTCLNLVSPDFDGDERRYARALAESIGTLLIEEHRELQDIDVTVSAAPHHPWPVA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC PLYKQTNEAIHRRLLGQLPVDAFFSGNGGDGILCGVRSAVPFIDRLLAEGPRPSLASTLY HHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH DLTLLTGADTKTVLKHGWDRYRRNRGRHSPLINLAGLGKEVGRKIRAEGASHPWLDAPDD HHHEECCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHCCHHHHHHHHHCCCCCCCCCCCCC ILPGKTVHAAFLMRAQKGIELYPRATMPPHIAPLMSQPIIEACLAIPTWDWIAGGQNRAV CCCCCHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHH ARKAFEGCLPELITARTQKGGPGDFHLSIYRAHRSALHDRLRGGILAESGILDLALLDTP HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC EDPSWRGTDRIDRILTFVAAENWARYWEGN CCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA