Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488000

Identifier: 103488000

GI number: 103488000

Start: 2659123

End: 2659734

Strand: Reverse

Name: 103488000

Synonym: Sala_2521

Alternate gene names: NA

Gene position: 2659734-2659123 (Counterclockwise)

Preceding gene: 103488012

Following gene: 103487999

Centisome position: 79.51

GC content: 70.92

Gene sequence:

>612_bases
ATGGCAAGCCCACTGCGCACGGCTGGGCCCGCCCATGATCCTCGGTCCCGCGGCGGCAGGCCGCCGCGAGCGAGCGCGGG
GGTTGCCGGGCCGCGTGGCGGACGGAGTGCGGCGAGAGAGGCTTGCTGCCGGTCCCCCGCGGAGAACCGAAATGACGCAT
TATGCAAAGCCCCACCGCCACGGCGGCAAATTCACCGGAAGGATCGCAGCATGAAACTGCTCACTGCGGAAATCGCAGCC
GCGCTCGCCGCCAATGCTGCCGCGCGGCACGACGCGATCGCGCGCGGCGCGCGCGAGCCCGATCCCAGACCTGTCGTGCG
CTTCTTCAGCCCCGTCGGCGCCGCGACCTGGCTTGCAACCGAGGTCGATGCCGACGGCATCCTGTTCGGCCTCGCGGACT
TGGGGTTCGGATGCCCCGAACTCGGAAGTTTCTCGCTTGCCGAACTCGAGGGGGTGCGCCTGCCCTTCGGGCTCGGCATC
GAGCGCGACCTTCACTTCGAGGCACGCCATCCCCTGTCGGTCTATGCCGAAGCGGCGCGCGCGGCGGGCTCGATCATCCT
TGGCGAGCAGCGCCTGCACGCAGCGGCGCGCCGGCTTTCGGCGCGGGGCTGA

Upstream 100 bases:

>100_bases
GAGGCCCACGCGCGCCCAGCCGGGAGCGGCAAGCAGGGTTTCTGCGACTCGGGCGGTATCGATTCTGTCCATGCCCATAT
GAGAACATAGGAAGAACAAC

Downstream 100 bases:

>100_bases
GGCCGCGGACTTGTTCGGGGCCGCCGGTGGCGGCCCCGTTCGAGGAAGAGGGAAGCCGGGGCTTCGTGACGGGTTTCAGG
AGCCGGGAGAGTGTCTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Transposon

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MASPLRTAGPAHDPRSRGGRPPRASAGVAGPRGGRSAAREACCRSPAENRNDALCKAPPPRRQIHRKDRSMKLLTAEIAA
ALAANAAARHDAIARGAREPDPRPVVRFFSPVGAATWLATEVDADGILFGLADLGFGCPELGSFSLAELEGVRLPFGLGI
ERDLHFEARHPLSVYAEAARAAGSIILGEQRLHAAARRLSARG

Sequences:

>Translated_203_residues
MASPLRTAGPAHDPRSRGGRPPRASAGVAGPRGGRSAAREACCRSPAENRNDALCKAPPPRRQIHRKDRSMKLLTAEIAA
ALAANAAARHDAIARGAREPDPRPVVRFFSPVGAATWLATEVDADGILFGLADLGFGCPELGSFSLAELEGVRLPFGLGI
ERDLHFEARHPLSVYAEAARAAGSIILGEQRLHAAARRLSARG
>Mature_202_residues
ASPLRTAGPAHDPRSRGGRPPRASAGVAGPRGGRSAAREACCRSPAENRNDALCKAPPPRRQIHRKDRSMKLLTAEIAAA
LAANAAARHDAIARGAREPDPRPVVRFFSPVGAATWLATEVDADGILFGLADLGFGCPELGSFSLAELEGVRLPFGLGIE
RDLHFEARHPLSVYAEAARAAGSIILGEQRLHAAARRLSARG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21402; Mature: 21270

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPLRTAGPAHDPRSRGGRPPRASAGVAGPRGGRSAAREACCRSPAENRNDALCKAPPP
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
RRQIHRKDRSMKLLTAEIAAALAANAAARHDAIARGAREPDPRPVVRFFSPVGAATWLAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
EVDADGILFGLADLGFGCPELGSFSLAELEGVRLPFGLGIERDLHFEARHPLSVYAEAAR
HCCCCHHEEEHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AAGSIILGEQRLHAAARRLSARG
HCCCEEECHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASPLRTAGPAHDPRSRGGRPPRASAGVAGPRGGRSAAREACCRSPAENRNDALCKAPPP
CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
RRQIHRKDRSMKLLTAEIAAALAANAAARHDAIARGAREPDPRPVVRFFSPVGAATWLAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
EVDADGILFGLADLGFGCPELGSFSLAELEGVRLPFGLGIERDLHFEARHPLSVYAEAAR
HCCCCHHEEEHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AAGSIILGEQRLHAAARRLSARG
HCCCEEECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA