| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is lptG [H]
Identifier: 103487658
GI number: 103487658
Start: 2287181
End: 2288281
Strand: Direct
Name: lptG [H]
Synonym: Sala_2177
Alternate gene names: 103487658
Gene position: 2287181-2288281 (Clockwise)
Preceding gene: 103487657
Following gene: 103487660
Centisome position: 68.37
GC content: 65.21
Gene sequence:
>1101_bases ATGCACCAGCTTCATTTCTTTCCCTCGCGCACCATGGCGCTCTATGTCGGGCGGCTGTTCCTGTTCCGCACCTTTGCGAT CCTTTTTGCGCTCGTGCTGATCCTCCAGACGCTCGACCTGCTCGGCGAAAGCGGCAAGATCCTGGCCGTTCCGGGCAACG GCGACAGCGACGTATGGCGCTATGTCGGAATGCGGATGCCGCAGATCATCGAGACCTTCCTGCCCTTTTCGGTGCTGCTC GGCACGATATTGACGATGGTGACGCTCAACCAGAACAGCGAGGTCGTCGCGATGAAGGCGGCGGGCATGTCGGCGCATCA GGTGCTCGCGCCGCTGTTCCTCGCGGCGCTGCTGGTCGCGGGGATCAGCTTTGCCTTCAACGAACGCATCGTCACGCGCT CGACCGCGGCGCTCGGCGCCTGGCAAAAGGTCGAATACAAGCGCGTTCCTGTCGACAGCGGGGTGCGCAGCAACATCTGG GTGCGCGACGGCGACGATCTGATCAACGCCGAAACGGTCGAGACGTCGGGGCCCGCGGTCGTGCTGCGCGGCGTCACCAT CTATGAACGCACGCGCGGCGTCCTGTCGTCGATGCTGTCGGCCGACAGCGCGCGCGCGCTGCCCGGCGGTGGATGGGAAA TGGCGAACGCGCGGCGCTTCTCGCGCCGATCGGGAACACTCGAACCGCTGGGCACGATCGTTGCGGCACCAAATGTGCGC CCCGACCAGTTCACGCTCGCCGACGTCGACGGCGACGAACTGCCCTTCCTGAAGCTGAAGGCGGCGATCGACGACCTCGA AGCCGCGGGGCGCCCGGTCGATGCGCTGAAGGGCGTGCTGTGGCACAAGATTTCGGGGCCGCTGTCGGCGATCTTGATGC CGCTGCTCGGCGCCGTCGCGGCGTTCGGGCTGGCGCGATCGGGCAAGCTGTTCGTGCGCGCGATCATCGGCATGGCGCTG GGCTTCGCCTATTTCGTCGCCGACAATTTCGCGCTGGCGATGGGCGATCTGGGCGCTTACTCGCCGTTTCTGGCGGCGTG GGGTCCGTTCATCCTGTTCGCGCTGATCGGCGAGATGATTTTGATCAGGACTGAGGAATAG
Upstream 100 bases:
>100_bases GTGGCCAGCCGATCGGCGCGCTCGAGCGCGTCGCGGCGAAGGGCGCGGAGCGGCTCCGCGGCCTCGTCCGTCTGTTCCAG CGTGAGCGAAGGCCGGGCTG
Downstream 100 bases:
>100_bases GGGACAGCGTCGGCTCGCGGGGGCGACGGGTTTATCCTCAGGCCGCCTTGCCCCGCGCCGAACCCGCGACCAAGTTCGCC ACCAGTTTCGGCAGACTGTC
Product: permease YjgP/YjgQ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MHQLHFFPSRTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFLPFSVLL GTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTRSTAALGAWQKVEYKRVPVDSGVRSNIW VRDGDDLINAETVETSGPAVVLRGVTIYERTRGVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVR PDQFTLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFGLARSGKLFVRAIIGMAL GFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMILIRTEE
Sequences:
>Translated_366_residues MHQLHFFPSRTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFLPFSVLL GTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTRSTAALGAWQKVEYKRVPVDSGVRSNIW VRDGDDLINAETVETSGPAVVLRGVTIYERTRGVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVR PDQFTLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFGLARSGKLFVRAIIGMAL GFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMILIRTEE >Mature_366_residues MHQLHFFPSRTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFLPFSVLL GTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTRSTAALGAWQKVEYKRVPVDSGVRSNIW VRDGDDLINAETVETSGPAVVLRGVTIYERTRGVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVR PDQFTLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFGLARSGKLFVRAIIGMAL GFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMILIRTEE
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
Organism=Escherichia coli, GI87082400, Length=366, Percent_Identity=25.4098360655738, Blast_Score=78, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 39529; Mature: 39529
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQLHFFPSRTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWR CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH YVGMRMPQIIETFLPFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVA HHHCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH GISFAFNERIVTRSTAALGAWQKVEYKRVPVDSGVRSNIWVRDGDDLINAETVETSGPAV HHHHHHCCHHHHHHHHHHCCHHHCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCEE VLRGVTIYERTRGVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVR EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHEEECCCCC PDQFTLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVA CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH AFGLARSGKLFVRAIIGMALGFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMI HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHHHHHHCCC LIRTEE EEEECC >Mature Secondary Structure MHQLHFFPSRTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWR CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH YVGMRMPQIIETFLPFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVA HHHCCCHHHHHHHCCHHHHHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH GISFAFNERIVTRSTAALGAWQKVEYKRVPVDSGVRSNIWVRDGDDLINAETVETSGPAV HHHHHHCCHHHHHHHHHHCCHHHCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCEE VLRGVTIYERTRGVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVR EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHEEECCCCC PDQFTLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVA CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH AFGLARSGKLFVRAIIGMALGFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMI HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHHHHHHCCC LIRTEE EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]