| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is atoS [C]
Identifier: 103487653
GI number: 103487653
Start: 2281255
End: 2283231
Strand: Direct
Name: atoS [C]
Synonym: Sala_2172
Alternate gene names: 103487653
Gene position: 2281255-2283231 (Clockwise)
Preceding gene: 103487652
Following gene: 103487657
Centisome position: 68.2
GC content: 69.4
Gene sequence:
>1977_bases GTGTTCGAGCGGGATCATGACAGCGAAACCGACGGGCGGCGCGAGCGGATACGCTTTGGCCTGACGGTCGGCGTGGCGAC GATCCTCGCAGGGGTCGTCACCGCGCTCGTGCTGCTGCTGGCGCGCGCGAACAATGACTATGACCGCTCGCTCGCCTGGC AGGCGCAGAGCCTGGAGGTGATCGCGCAGACGCGCTCGGTCGATGCCGCGCTCGCGCGCGCCGAAGCCGCGCTGGGGCGT TTCGCCGTCGGCCTGCGGAAAGAGGATGGGCGCATCTATGAACAGCAATGGGGGCGCGCGCGCCAGTTCCTCGCCCAGCT CGAACGCAATGTCCGCGACAACCCGGCGCAAGGCCGTCTTGTCCAGCAACTGACGCAGGAAATGAACAGCCGCGGCGCGC AGCTCGGCGATGCCGCCCTCAGCGCCAACTACAACCAGACGGTCGCCGCCATATCGAAATTTTATGCCGCGGGCCAGGGC GACGGGCTGGCCAGGATCGACAAGCTGCTGACGCAGATCATCACCAACGAGCGCGCCCTGCTGCGCGAGCGCAACCGCGT CGCCGCCGCCGACCGCGCGAGTCTCAATCAGGCGATGCTGCTCTTTTCGCTGCTCGGCGCGGCCGCGGCCGTGCTGGCGA TCGGCGCCACCTTCTCGCTCATCCGCGCGCAGGGCGAACGGCGGCTGGCGCGGCGCGAACAGGCAGCCGAAGCCGAACGC GCGATGCAGCTCGAAGCCGCGGTCGAAGCGCGCACAGCCGAGCTTGAACAGGCGAATATCGCGCTGCGCAGCGAAATGGC GGAGCGCGAGGCGGCTGAAGCGCAGTTACGGCAGGCGCAAAAGATGGAGGCGGTCGGCCAGCTGACCGGCGGCATCGCGC ATGACTTCAACAATATGCTCGCGGTCGTCGTCGGCGGGCTCGAACTTGCCGAGCGCTGGCTGCCCGGTCAGCCCGAAAAG GCGCAGCGCCACCTTGCCAATGCGCTCGACGGCGCCAATCGCGCCGCCGACCTGACGCGGCGGCTGCTCACCTTTGCGCG CGCCGAGCCCGCGCGCCCCGAAATGACCGCGATCGACGAATCGATCGGCAGCTTTGCGCCGCTGATCGAACGCACGATCG GCGACCGCATCGCGCTGACGCTTGACCTCGATGCCGCGGCGCTGGCGTGCTGGATCGACCGCCAGCAGTTCGAAAATGCG CTGCTCAACCTGGCCGTCAATGCCCGCGACGCGATGGACGGACACGGATCGCTGACGATCCGCACACGCGGCGCGGGCCA GGATGACGCGCGCACGCTGGCGGTCGAGGTGATCGACACCGGCTGCGGCATGACGGCAGAGGTGCTCGATCGCGTCTTCG ACCCCTTTTATACGACCAAGCCCGCCGGCCAGGGCACCGGCCTCGGCATGAGCCAGGTCTTTGCCTTCTGCCGCCAGTCG GGCGGCGAGGTGCAGATCGCATCGACCGAGGGCGCAGGCACGACCGTCGCGATGCTGTTGCCGATCGCCAGCGCGCAACC CGGCACCGTCACCGACGAGGCGCCCGGCCACGTCGTGGCAGCGACGACGCCCGCCGATGCGCTGACCATTCTGGTGGTAG AGGACGATGCGCGCGTGCTGGTCGCGACGGTCGATGCCGTGCGCGAACTCGGCCATCGCGCGGTCGCGTGCAGCAACCCG CTGGAGGCCGAGGCGCTGGTCGAGGCGCGGATCAAGGAGGGACAGGCGCGTTTCGACCTGATCCTGACCGACGTGCTGAT GCCTGACCTCACCGGTCCCGAACTGGTCGCGCGACTGACGCAGCGCTGGCCCGACCTGTCGGTGCTGTTCGTGACCGGCT ATGCCGGCGACGCAAGCGAGGGCGCGGCGTTCGGCGACCATGACGTGCTGCGCAAGCCCTTCACCCTGTCGGCGCTCGAC CAGGCGATCCGGCGCTGCGGCGAGGCGCGGTCGGAACGGCGCCGGCTGGCGAGTTGA
Upstream 100 bases:
>100_bases CCCGACCAGCGGATTCCTTTTCGCGGCGAACCGAGTGCGCGAACGGGCAGCGGCGGCTTCGCGGCTTTGCCGTGGCGCGC GTGTCCGGTAAGACAGTCCG
Downstream 100 bases:
>100_bases GATCGAATCTCGATCGCGAAGGAATGCGGTCGGAACGCCTGTGGATCTTCCGCGAAGGCGGGAATCCATCACCGGACGGC GCAAAATCGAACCGGCAGGA
Product: periplasmic sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MFERDHDSETDGRRERIRFGLTVGVATILAGVVTALVLLLARANNDYDRSLAWQAQSLEVIAQTRSVDAALARAEAALGR FAVGLRKEDGRIYEQQWGRARQFLAQLERNVRDNPAQGRLVQQLTQEMNSRGAQLGDAALSANYNQTVAAISKFYAAGQG DGLARIDKLLTQIITNERALLRERNRVAAADRASLNQAMLLFSLLGAAAAVLAIGATFSLIRAQGERRLARREQAAEAER AMQLEAAVEARTAELEQANIALRSEMAEREAAEAQLRQAQKMEAVGQLTGGIAHDFNNMLAVVVGGLELAERWLPGQPEK AQRHLANALDGANRAADLTRRLLTFARAEPARPEMTAIDESIGSFAPLIERTIGDRIALTLDLDAAALACWIDRQQFENA LLNLAVNARDAMDGHGSLTIRTRGAGQDDARTLAVEVIDTGCGMTAEVLDRVFDPFYTTKPAGQGTGLGMSQVFAFCRQS GGEVQIASTEGAGTTVAMLLPIASAQPGTVTDEAPGHVVAATTPADALTILVVEDDARVLVATVDAVRELGHRAVACSNP LEAEALVEARIKEGQARFDLILTDVLMPDLTGPELVARLTQRWPDLSVLFVTGYAGDASEGAAFGDHDVLRKPFTLSALD QAIRRCGEARSERRRLAS
Sequences:
>Translated_658_residues MFERDHDSETDGRRERIRFGLTVGVATILAGVVTALVLLLARANNDYDRSLAWQAQSLEVIAQTRSVDAALARAEAALGR FAVGLRKEDGRIYEQQWGRARQFLAQLERNVRDNPAQGRLVQQLTQEMNSRGAQLGDAALSANYNQTVAAISKFYAAGQG DGLARIDKLLTQIITNERALLRERNRVAAADRASLNQAMLLFSLLGAAAAVLAIGATFSLIRAQGERRLARREQAAEAER AMQLEAAVEARTAELEQANIALRSEMAEREAAEAQLRQAQKMEAVGQLTGGIAHDFNNMLAVVVGGLELAERWLPGQPEK AQRHLANALDGANRAADLTRRLLTFARAEPARPEMTAIDESIGSFAPLIERTIGDRIALTLDLDAAALACWIDRQQFENA LLNLAVNARDAMDGHGSLTIRTRGAGQDDARTLAVEVIDTGCGMTAEVLDRVFDPFYTTKPAGQGTGLGMSQVFAFCRQS GGEVQIASTEGAGTTVAMLLPIASAQPGTVTDEAPGHVVAATTPADALTILVVEDDARVLVATVDAVRELGHRAVACSNP LEAEALVEARIKEGQARFDLILTDVLMPDLTGPELVARLTQRWPDLSVLFVTGYAGDASEGAAFGDHDVLRKPFTLSALD QAIRRCGEARSERRRLAS >Mature_658_residues MFERDHDSETDGRRERIRFGLTVGVATILAGVVTALVLLLARANNDYDRSLAWQAQSLEVIAQTRSVDAALARAEAALGR FAVGLRKEDGRIYEQQWGRARQFLAQLERNVRDNPAQGRLVQQLTQEMNSRGAQLGDAALSANYNQTVAAISKFYAAGQG DGLARIDKLLTQIITNERALLRERNRVAAADRASLNQAMLLFSLLGAAAAVLAIGATFSLIRAQGERRLARREQAAEAER AMQLEAAVEARTAELEQANIALRSEMAEREAAEAQLRQAQKMEAVGQLTGGIAHDFNNMLAVVVGGLELAERWLPGQPEK AQRHLANALDGANRAADLTRRLLTFARAEPARPEMTAIDESIGSFAPLIERTIGDRIALTLDLDAAALACWIDRQQFENA LLNLAVNARDAMDGHGSLTIRTRGAGQDDARTLAVEVIDTGCGMTAEVLDRVFDPFYTTKPAGQGTGLGMSQVFAFCRQS GGEVQIASTEGAGTTVAMLLPIASAQPGTVTDEAPGHVVAATTPADALTILVVEDDARVLVATVDAVRELGHRAVACSNP LEAEALVEARIKEGQARFDLILTDVLMPDLTGPELVARLTQRWPDLSVLFVTGYAGDASEGAAFGDHDVLRKPFTLSALD QAIRRCGEARSERRRLAS
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=244, Percent_Identity=26.6393442622951, Blast_Score=103, Evalue=5e-23, Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=30.3643724696356, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI48994928, Length=261, Percent_Identity=27.9693486590038, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87081816, Length=388, Percent_Identity=27.319587628866, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1788713, Length=254, Percent_Identity=27.9527559055118, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1790300, Length=246, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 70854; Mature: 70854
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFERDHDSETDGRRERIRFGLTVGVATILAGVVTALVLLLARANNDYDRSLAWQAQSLEV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IAQTRSVDAALARAEAALGRFAVGLRKEDGRIYEQQWGRARQFLAQLERNVRDNPAQGRL HHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH VQQLTQEMNSRGAQLGDAALSANYNQTVAAISKFYAAGQGDGLARIDKLLTQIITNERAL HHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHH LRERNRVAAADRASLNQAMLLFSLLGAAAAVLAIGATFSLIRAQGERRLARREQAAEAER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMQLEAAVEARTAELEQANIALRSEMAEREAAEAQLRQAQKMEAVGQLTGGIAHDFNNML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVVGGLELAERWLPGQPEKAQRHLANALDGANRAADLTRRLLTFARAEPARPEMTAIDE HHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH SIGSFAPLIERTIGDRIALTLDLDAAALACWIDRQQFENALLNLAVNARDAMDGHGSLTI HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE RTRGAGQDDARTLAVEVIDTGCGMTAEVLDRVFDPFYTTKPAGQGTGLGMSQVFAFCRQS EECCCCCCCHHEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC GGEVQIASTEGAGTTVAMLLPIASAQPGTVTDEAPGHVVAATTPADALTILVVEDDARVL CCEEEEEECCCCCCCHHHEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEE VATVDAVRELGHRAVACSNPLEAEALVEARIKEGQARFDLILTDVLMPDLTGPELVARLT EHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH QRWPDLSVLFVTGYAGDASEGAAFGDHDVLRKPFTLSALDQAIRRCGEARSERRRLAS HHCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFERDHDSETDGRRERIRFGLTVGVATILAGVVTALVLLLARANNDYDRSLAWQAQSLEV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IAQTRSVDAALARAEAALGRFAVGLRKEDGRIYEQQWGRARQFLAQLERNVRDNPAQGRL HHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH VQQLTQEMNSRGAQLGDAALSANYNQTVAAISKFYAAGQGDGLARIDKLLTQIITNERAL HHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHH LRERNRVAAADRASLNQAMLLFSLLGAAAAVLAIGATFSLIRAQGERRLARREQAAEAER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMQLEAAVEARTAELEQANIALRSEMAEREAAEAQLRQAQKMEAVGQLTGGIAHDFNNML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVVGGLELAERWLPGQPEKAQRHLANALDGANRAADLTRRLLTFARAEPARPEMTAIDE HHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH SIGSFAPLIERTIGDRIALTLDLDAAALACWIDRQQFENALLNLAVNARDAMDGHGSLTI HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE RTRGAGQDDARTLAVEVIDTGCGMTAEVLDRVFDPFYTTKPAGQGTGLGMSQVFAFCRQS EECCCCCCCHHEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC GGEVQIASTEGAGTTVAMLLPIASAQPGTVTDEAPGHVVAATTPADALTILVVEDDARVL CCEEEEEECCCCCCCHHHEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEE VATVDAVRELGHRAVACSNPLEAEALVEARIKEGQARFDLILTDVLMPDLTGPELVARLT EHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH QRWPDLSVLFVTGYAGDASEGAAFGDHDVLRKPFTLSALDQAIRRCGEARSERRRLAS HHCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA