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The map label for this gene is yrpB [H]

Identifier: 103487628

GI number: 103487628

Start: 2256213

End: 2257217

Strand: Direct

Name: yrpB [H]

Synonym: Sala_2147

Alternate gene names: 103487628

Gene position: 2256213-2257217 (Clockwise)

Preceding gene: 103487625

Following gene: 103487629

Centisome position: 67.45

GC content: 65.57

Gene sequence:

>1005_bases
ATGAGCAAAATACATGAACTGATGGCCCGCGGGACCGATCTCCTCGGCAGCGATTACGCCATCCTCTGCGGCGCGATGAG
CTGGGTTTCCGAACGCCATCTGGTGAGCGCGATCAGCAATGCGGGCGGCTTCGGCGTGATTGCGTGCGGCGCGATGACGC
CGGACCTGCTCGACGCCGAAATCGCCGCGACCAGGGCGCTGGCGACGCGCAATTTCGGCGTCAACCTGATCACCATGCAC
CCGCAATTGTTCGAACTGATCGACGTGTGCGCCAAGCATGACGTCGGCCATGTCGTGCTCGCGGGCGGTCTGCCGCCGAA
GGGCAGCCTCGAGGCGATCAAGGCGTCGGGCGCAAAGGTCATCTGCTTTGCCCCGACGCTCGCGCTCGCCAAAAAGCTCG
TCCGCTCGGGCGTCGATGCGCTGGTGATCGAGGGCATGGAGGCCGGCGGTCACATCGGCCCGGTATCGACGAGCGTGCTG
GCGCAGGAAATCCTGCCTTCACTCGCCGACGCGCTTCCGGTCTTCGTCGCCGGCGGCATCGGGCGCGGCGAGGCGATCGC
CGCCTATCTGGAAATGGGCGCATCGGGGGTCCAGCTTGGCACGCGCTTTGTCTGCGCGACCGAAAGCATCGCGCATCCCA
ATTTCAAAAAGGCTTTCTTGCGCGCCTCGGCGCGCGACGCGGTGGCGAGCGTCCAGATCGACCCGCGCCTGCCGGTCATT
CCGGTCCGCGCGCTCAAGAACGCCGGGACCGAAGCCTTTACCGCCAAACAGCGCGAAGTCGCGAACAAGCTCGACAAGGG
CGAGGTCGACATGGCCGCCGCGCAGCTGGAGATCGAGCATTATTGGGCGGGCGCGCTGCGCCGCGCCGTCATCGACGGCG
ACGTCGAAAACGGGTCGTTAATGGCGGGGCAATCTGTCGGTATGGTATCCGAAGAAGAGAGTGCGGCGGAAATCGTCGCA
TCGCTGGTGCAACAGGCCGAAGCGGCCTTGCACGCCCGGGGTTGA

Upstream 100 bases:

>100_bases
GCGCGCCGCGCGCCGAACCGACTCTCCCGCGCGACGAGCCGCAAGGCGGATCACCGCTATCCATTGCGCCGGAACCTTCG
GGCTGGCAAAGGCGGCGTCA

Downstream 100 bases:

>100_bases
TGCCGCACGATCGGGCGGTTGGGGAGTGGATCATGAATTTGTCGCGTAAGATCATCGTAGCCGGCCTGCTGGCGAGCGTC
GCCGCCTGTGCGCCGAAGCC

Product: 2-nitropropane dioxygenase, NPD

Products: NA

Alternate protein names: Nitroalkane oxidase [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSKIHELMARGTDLLGSDYAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPDLLDAEIAATRALATRNFGVNLITMH
PQLFELIDVCAKHDVGHVVLAGGLPPKGSLEAIKASGAKVICFAPTLALAKKLVRSGVDALVIEGMEAGGHIGPVSTSVL
AQEILPSLADALPVFVAGGIGRGEAIAAYLEMGASGVQLGTRFVCATESIAHPNFKKAFLRASARDAVASVQIDPRLPVI
PVRALKNAGTEAFTAKQREVANKLDKGEVDMAAAQLEIEHYWAGALRRAVIDGDVENGSLMAGQSVGMVSEEESAAEIVA
SLVQQAEAALHARG

Sequences:

>Translated_334_residues
MSKIHELMARGTDLLGSDYAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPDLLDAEIAATRALATRNFGVNLITMH
PQLFELIDVCAKHDVGHVVLAGGLPPKGSLEAIKASGAKVICFAPTLALAKKLVRSGVDALVIEGMEAGGHIGPVSTSVL
AQEILPSLADALPVFVAGGIGRGEAIAAYLEMGASGVQLGTRFVCATESIAHPNFKKAFLRASARDAVASVQIDPRLPVI
PVRALKNAGTEAFTAKQREVANKLDKGEVDMAAAQLEIEHYWAGALRRAVIDGDVENGSLMAGQSVGMVSEEESAAEIVA
SLVQQAEAALHARG
>Mature_333_residues
SKIHELMARGTDLLGSDYAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPDLLDAEIAATRALATRNFGVNLITMHP
QLFELIDVCAKHDVGHVVLAGGLPPKGSLEAIKASGAKVICFAPTLALAKKLVRSGVDALVIEGMEAGGHIGPVSTSVLA
QEILPSLADALPVFVAGGIGRGEAIAAYLEMGASGVQLGTRFVCATESIAHPNFKKAFLRASARDAVASVQIDPRLPVIP
VRALKNAGTEAFTAKQREVANKLDKGEVDMAAAQLEIEHYWAGALRRAVIDGDVENGSLMAGQSVGMVSEEESAAEIVAS
LVQQAEAALHARG

Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: =1.13.12.16 [H]

Molecular weight: Translated: 34620; Mature: 34489

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIHELMARGTDLLGSDYAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPDLLDAE
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IAATRALATRNFGVNLITMHPQLFELIDVCAKHDVGHVVLAGGLPPKGSLEAIKASGAKV
HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCEE
ICFAPTLALAKKLVRSGVDALVIEGMEAGGHIGPVSTSVLAQEILPSLADALPVFVAGGI
EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GRGEAIAAYLEMGASGVQLGTRFVCATESIAHPNFKKAFLRASARDAVASVQIDPRLPVI
CCHHHHHHHHHHCCCCHHHCCEEEEECHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCEE
PVRALKNAGTEAFTAKQREVANKLDKGEVDMAAAQLEIEHYWAGALRRAVIDGDVENGSL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
MAGQSVGMVSEEESAAEIVASLVQQAEAALHARG
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKIHELMARGTDLLGSDYAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPDLLDAE
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IAATRALATRNFGVNLITMHPQLFELIDVCAKHDVGHVVLAGGLPPKGSLEAIKASGAKV
HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCEE
ICFAPTLALAKKLVRSGVDALVIEGMEAGGHIGPVSTSVLAQEILPSLADALPVFVAGGI
EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GRGEAIAAYLEMGASGVQLGTRFVCATESIAHPNFKKAFLRASARDAVASVQIDPRLPVI
CCHHHHHHHHHHCCCCHHHCCEEEEECHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCEE
PVRALKNAGTEAFTAKQREVANKLDKGEVDMAAAQLEIEHYWAGALRRAVIDGDVENGSL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
MAGQSVGMVSEEESAAEIVASLVQQAEAALHARG
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]