| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487620
Identifier: 103487620
GI number: 103487620
Start: 2242980
End: 2244113
Strand: Direct
Name: 103487620
Synonym: Sala_2139
Alternate gene names: NA
Gene position: 2242980-2244113 (Clockwise)
Preceding gene: 103487619
Following gene: 103487621
Centisome position: 67.05
GC content: 65.26
Gene sequence:
>1134_bases ATGATGTCGTCCTGGAAATATATGCTGCTCGCCGGCGCCGCGGCGCTTGCGCCCGCCGCCGCCCTCGCCGCGCCAACCGA AGCGCCGCTGGCGGAAGTCGTCACCACACCGGCAGAAGAGGACGCGGCCGCTCCGTTCGACAGCGAGGCCGCGGCCGCCG AAGCCAAGGCGAAGATGCAGAAGGAAATGGACGAGGTGATCACCCTCGTCGAAAAGATGTTCGATACGAAGAGCCTGCCG CCGATCGACCCCGCGCGGCTGGCGATTGCCGAGCAGACGACCGCGGCGCTGATCCCGACCGGGAGCATCGAAAAGATGCT CGACAATATGTACGGTCGGATGTTCCGCACGCTGATGGGCGAGTTCAGTGGCCAGTCGGACCTGATGCTGTCGATCAAGA CCGGCGTCGAAAGCGACAAGATCGCCGCGCTCGACGATGCGACCAAGGGGCAGATCGCCGACCTGTTCGATCCCCATCGC AAGGAGCGCGAGGATCAGATCACGCGCCTCGTGATGCCGCTGATCCGCGAGGCGCTCGCCGACATGGAACCGCCAATGCG TGCGGGTCTGGCCAAGGCTTATGCGCGCAAGTTCACCGGCGCACAGCTGGCCGACCTCAACGCCTTCCTCGCGACGCCGA CGGGCCAGCTCTACGCCAGCGAATGGATGGCGTTACAGGCCGATCCCGAAGTCATGGTCGCGGTGGTCAAGGCGGTGCCG CCGCTGCTCACCAAATTCATGGACCGCGCGCCCGAGATCGAAAAGGATTTCAAGGAGCTGCCCAAGGAAAGGCAGCTCGC CGATTTGAGCGACGGGGAGCTGGCGAAGCTCGCCAGGCTGATGAAGGTCGATGTGAGCGCACTCAAGGAACAGCGCGACA TGTGGAATGCCGACAGCATGGAGGCGACCGAGGCGGCGGGTTCCGAGGATTATGCGGACGATGCCGCGGTCGACGCCGCA GTCGACGCCGCGGACGCCGCCGCGATGGCGGTCGAGAACAGCGAATATGACCGCAGCAACTGGTCCGATGCCGACCGCCA GCGCGTCGAGGAACTCGAAGCCGCCTATCGCAAAGCCGAAGCCGCGGCGGTCGAAAAGGCGCGCGAACGGCTCGGCCGGA ACCCTTCAGACTAG
Upstream 100 bases:
>100_bases TCCGCGACGGCCGCGACGTCAGCGACCAGATGGCAAAGTGGTTGAAGGCGAAAGCGAAAAGCGAAAAGAAGGCAGCATGA CCAACAGGGGAAGGAAGTTC
Downstream 100 bases:
>100_bases GCGCTCGCCTATCCCGTCAGGACGAATATGATGACCCACTACCCCACCCCCGAACATGCGCGGCTTGCCGAACAGGGCAT GTATCGCCCCGACATGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MMSSWKYMLLAGAAALAPAAALAAPTEAPLAEVVTTPAEEDAAAPFDSEAAAAEAKAKMQKEMDEVITLVEKMFDTKSLP PIDPARLAIAEQTTAALIPTGSIEKMLDNMYGRMFRTLMGEFSGQSDLMLSIKTGVESDKIAALDDATKGQIADLFDPHR KEREDQITRLVMPLIREALADMEPPMRAGLAKAYARKFTGAQLADLNAFLATPTGQLYASEWMALQADPEVMVAVVKAVP PLLTKFMDRAPEIEKDFKELPKERQLADLSDGELAKLARLMKVDVSALKEQRDMWNADSMEATEAAGSEDYADDAAVDAA VDAADAAAMAVENSEYDRSNWSDADRQRVEELEAAYRKAEAAAVEKARERLGRNPSD
Sequences:
>Translated_377_residues MMSSWKYMLLAGAAALAPAAALAAPTEAPLAEVVTTPAEEDAAAPFDSEAAAAEAKAKMQKEMDEVITLVEKMFDTKSLP PIDPARLAIAEQTTAALIPTGSIEKMLDNMYGRMFRTLMGEFSGQSDLMLSIKTGVESDKIAALDDATKGQIADLFDPHR KEREDQITRLVMPLIREALADMEPPMRAGLAKAYARKFTGAQLADLNAFLATPTGQLYASEWMALQADPEVMVAVVKAVP PLLTKFMDRAPEIEKDFKELPKERQLADLSDGELAKLARLMKVDVSALKEQRDMWNADSMEATEAAGSEDYADDAAVDAA VDAADAAAMAVENSEYDRSNWSDADRQRVEELEAAYRKAEAAAVEKARERLGRNPSD >Mature_377_residues MMSSWKYMLLAGAAALAPAAALAAPTEAPLAEVVTTPAEEDAAAPFDSEAAAAEAKAKMQKEMDEVITLVEKMFDTKSLP PIDPARLAIAEQTTAALIPTGSIEKMLDNMYGRMFRTLMGEFSGQSDLMLSIKTGVESDKIAALDDATKGQIADLFDPHR KEREDQITRLVMPLIREALADMEPPMRAGLAKAYARKFTGAQLADLNAFLATPTGQLYASEWMALQADPEVMVAVVKAVP PLLTKFMDRAPEIEKDFKELPKERQLADLSDGELAKLARLMKVDVSALKEQRDMWNADSMEATEAAGSEDYADDAAVDAA VDAADAAAMAVENSEYDRSNWSDADRQRVEELEAAYRKAEAAAVEKARERLGRNPSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40954; Mature: 40954
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSSWKYMLLAGAAALAPAAALAAPTEAPLAEVVTTPAEEDAAAPFDSEAAAAEAKAKMQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH KEMDEVITLVEKMFDTKSLPPIDPARLAIAEQTTAALIPTGSIEKMLDNMYGRMFRTLMG HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH EFSGQSDLMLSIKTGVESDKIAALDDATKGQIADLFDPHRKEREDQITRLVMPLIREALA HCCCCCCEEEEEECCCCCCCEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH DMEPPMRAGLAKAYARKFTGAQLADLNAFLATPTGQLYASEWMALQADPEVMVAVVKAVP HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHEECCCHHHHHHHHHHHH PLLTKFMDRAPEIEKDFKELPKERQLADLSDGELAKLARLMKVDVSALKEQRDMWNADSM HHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC EATEAAGSEDYADDAAVDAAVDAADAAAMAVENSEYDRSNWSDADRQRVEELEAAYRKAE HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AAAVEKARERLGRNPSD HHHHHHHHHHHCCCCCC >Mature Secondary Structure MMSSWKYMLLAGAAALAPAAALAAPTEAPLAEVVTTPAEEDAAAPFDSEAAAAEAKAKMQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH KEMDEVITLVEKMFDTKSLPPIDPARLAIAEQTTAALIPTGSIEKMLDNMYGRMFRTLMG HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH EFSGQSDLMLSIKTGVESDKIAALDDATKGQIADLFDPHRKEREDQITRLVMPLIREALA HCCCCCCEEEEEECCCCCCCEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH DMEPPMRAGLAKAYARKFTGAQLADLNAFLATPTGQLYASEWMALQADPEVMVAVVKAVP HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHEECCCHHHHHHHHHHHH PLLTKFMDRAPEIEKDFKELPKERQLADLSDGELAKLARLMKVDVSALKEQRDMWNADSM HHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC EATEAAGSEDYADDAAVDAAVDAADAAAMAVENSEYDRSNWSDADRQRVEELEAAYRKAE HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AAAVEKARERLGRNPSD HHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA