| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487499
Identifier: 103487499
GI number: 103487499
Start: 2126574
End: 2127239
Strand: Direct
Name: 103487499
Synonym: Sala_2016
Alternate gene names: NA
Gene position: 2126574-2127239 (Clockwise)
Preceding gene: 103487492
Following gene: 103487500
Centisome position: 63.57
GC content: 65.32
Gene sequence:
>666_bases GTGACCGCTTTTTCGATTGTCCTGCTCGCCATGATCGCCGCCTTCCTCGGAATGCGGCTTTACTCGGTGCTCGGCAAGCG CACGGGGCATGAACAGGAGCCCGTGCTGCCGCGGCGCGACGATCGCTCCGCGCCGGCGCCGATCCGCCTCGACGATGGTG AGACATCGGCGATCGTGACCTCGGCGACCGATACCGCCGGGCTCGTCTATGAGCCTTCGGCGGAGGCCGGCCTTCGCCAA CTGCTTGCGAACGACCGCAATTTTGACGCGGGGCGGTTTATGGAGGGCGCCAGGGCGGCCTATCGCATGATCCTCGAGGC CTTTTGGAAGGGCGACCGCGAGACGCTGCGCGATCTTTGCGACGACGACAGCTATGACGCCTTTGTCGAGGCGATCGACG CGCGCGAGGCACGGGGCGAGACGCTGGAAAACCGCCTGATCAGGATCGATTCGGCAAAGATCACCGCGGCGGAGCTGAAT CGCGGCGAAGCGCGCATCACCGTGCGCTATCACGCCGACATCAGTGCCATTACGCGCGACGCCGACGGCAAGCTGATTGC CGGATCGATGAGCGACGCCGCACAGACCGACGACCTGTGGACCTTCCGCCGCCAGATCGGCAGCAACGATCCCAACTGGC TGCTCGACGAAGCCGAATCGGCCTGA
Upstream 100 bases:
>100_bases GACGCGCCGGGCGTCAGCGACCATGGCCATTTGAAACGCGACAACGTATCGCCTATGTATTGCGTGATATGTCGCCATTG CTCGCATTGGACCCCTGCCC
Downstream 100 bases:
>100_bases CGCCATGATCCGGCTTGCGGGGGCGCCACGCGCGCGTCTTTTCCGGCTCGCGCTGCTCGCCGCCTTCCCGCTCCTCTCGG GCTGCGTGTCGGTCATTCCC
Product: import inner membrane translocase, subunit Tim44
Products: NA
Alternate protein names: Translocase Transmembrane Protein; Tim44-Like Domain-Containing Protein; Mitochondrial Import Inner Membrane Translocase; Tim44 Domain-Containing Protein; Mitochondrial Import Inner Membrane Translocase Subunit Tim; Transporter Protein; Tim44 Family Protein; Tim44-Like Domain Family; Membrane Translocase Subunit Tim; Import Inner Membrane Translocase; Import Inner Membrane Translocase Subunit; Membrane Associated Transporter Protein; Tim44-Like Domain Superfamily; Tim44-Like Domain Containing Protein; Tim44-Like Domain Protein
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MTAFSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDDRSAPAPIRLDDGETSAIVTSATDTAGLVYEPSAEAGLRQ LLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRDLCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELN RGEARITVRYHADISAITRDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA
Sequences:
>Translated_221_residues MTAFSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDDRSAPAPIRLDDGETSAIVTSATDTAGLVYEPSAEAGLRQ LLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRDLCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELN RGEARITVRYHADISAITRDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA >Mature_220_residues TAFSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDDRSAPAPIRLDDGETSAIVTSATDTAGLVYEPSAEAGLRQL LANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRDLCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNR GEARITVRYHADISAITRDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA
Specific function: Unknown
COG id: COG4395
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24431; Mature: 24299
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDDRSAPAPIRLDDGETSAIVT CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEE SATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRDLC ECCCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAITRD CCCCHHHHHHHHHHHHHCCHHHHHHEEEECCCEEEHHHCCCCCEEEEEEEECCHHHHHCC ADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC >Mature Secondary Structure TAFSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDDRSAPAPIRLDDGETSAIVT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEE SATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRDLC ECCCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAITRD CCCCHHHHHHHHHHHHHCCHHHHHHEEEECCCEEEHHHCCCCCEEEEEEEECCHHHHHCC ADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA