Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487469
Identifier: 103487469
GI number: 103487469
Start: 2095486
End: 2096022
Strand: Direct
Name: 103487469
Synonym: Sala_1986
Alternate gene names: NA
Gene position: 2095486-2096022 (Clockwise)
Preceding gene: 103487468
Following gene: 103487479
Centisome position: 62.64
GC content: 67.6
Gene sequence:
>537_bases ATGCTCTACGACATGACCGTGCCCGCTTACGTCAACGGATTGAATGCCCTCTCCGCCCAGCTCGACAAGGCACGTGCCTG GGGCGCCGACAATGGCGTTGGCGAACAGCAGCTGCTGGCGGCCCGCCTCGCGCCCGACATGTTCCCGCTCGCGGCACAGA TCCGCTTCGCCTGCATGCAGGCGGTCCAGCCCGCGACGCGCCTCGGCGCAGCGGGTGCGCCCGGCTTTGCTGAGGACGGC GCCGATTTCGCCGCGCTCCAGGCGCAAATCGCCGACGCGCTCGCCTGGCTCGGAGGGATCGACCGGTCGAGCGTCGAGGG CGAGGCGGACCGGCCGGTCAGCTTCGACCTGCCCAACGGAATGGTCTTCGACATGACCGCCCTCACCTATGTTCGCGACT GGGCGCAGCCGCAGTTTTATTTCCATCTCGTTGCCGCCTATGCCATCCTGCGGCATATGGGAGCGCCGCTCGGCAAGGCC GATTACGTCGGCTATATGATGGCCTATCTCCGCCCCGGAACGGCGCCGACGGGCTGA
Upstream 100 bases:
>100_bases CGACGGCCTTTATGCCCGCCTCGCGCGTCTTCAGTTTCAGGACAGTCTGACCGCGGCCTGATTGGCACACCGCGTCCAAC TCCCCAGCGAAGGATCAACG
Downstream 100 bases:
>100_bases AGTGCGATCAGATCAGGTCGCGATAGCCGTCGATCCCCGGAAAGGCGATTGTCGTCCCGCCGTTGCGGCGGATCGCGCCG ATCGCCTGATCGACGCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MLYDMTVPAYVNGLNALSAQLDKARAWGADNGVGEQQLLAARLAPDMFPLAAQIRFACMQAVQPATRLGAAGAPGFAEDG ADFAALQAQIADALAWLGGIDRSSVEGEADRPVSFDLPNGMVFDMTALTYVRDWAQPQFYFHLVAAYAILRHMGAPLGKA DYVGYMMAYLRPGTAPTG
Sequences:
>Translated_178_residues MLYDMTVPAYVNGLNALSAQLDKARAWGADNGVGEQQLLAARLAPDMFPLAAQIRFACMQAVQPATRLGAAGAPGFAEDG ADFAALQAQIADALAWLGGIDRSSVEGEADRPVSFDLPNGMVFDMTALTYVRDWAQPQFYFHLVAAYAILRHMGAPLGKA DYVGYMMAYLRPGTAPTG >Mature_178_residues MLYDMTVPAYVNGLNALSAQLDKARAWGADNGVGEQQLLAARLAPDMFPLAAQIRFACMQAVQPATRLGAAGAPGFAEDG ADFAALQAQIADALAWLGGIDRSSVEGEADRPVSFDLPNGMVFDMTALTYVRDWAQPQFYFHLVAAYAILRHMGAPLGKA DYVGYMMAYLRPGTAPTG
Specific function: Unknown
COG id: COG3812
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18992; Mature: 18992
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYDMTVPAYVNGLNALSAQLDKARAWGADNGVGEQQLLAARLAPDMFPLAAQIRFACMQ CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH AVQPATRLGAAGAPGFAEDGADFAALQAQIADALAWLGGIDRSSVEGEADRPVSFDLPNG HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC MVFDMTALTYVRDWAQPQFYFHLVAAYAILRHMGAPLGKADYVGYMMAYLRPGTAPTG EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLYDMTVPAYVNGLNALSAQLDKARAWGADNGVGEQQLLAARLAPDMFPLAAQIRFACMQ CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH AVQPATRLGAAGAPGFAEDGADFAALQAQIADALAWLGGIDRSSVEGEADRPVSFDLPNG HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC MVFDMTALTYVRDWAQPQFYFHLVAAYAILRHMGAPLGKADYVGYMMAYLRPGTAPTG EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA