Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487479
Identifier: 103487479
GI number: 103487479
Start: 2105680
End: 2106015
Strand: Direct
Name: 103487479
Synonym: Sala_1996
Alternate gene names: NA
Gene position: 2105680-2106015 (Clockwise)
Preceding gene: 103487469
Following gene: 103487480
Centisome position: 62.95
GC content: 61.01
Gene sequence:
>336_bases ATGCTGATTACGACACTGGTTCTGGCTGCGATGGTCCAGTCGCCCGCCGCGACGGTCGACCGGACGCGCGCCGCTTTCAC CAAATGCCTTCGCGACGACCTCAAACGATCGCTCGAAGCCAAGATCGAAGAGGCCGAATATGGGATGCGGCTGAAGGCGA ACTGCGCGAATGAACGCGACGCCTTTCGCAAGGCGGTGATCGCGCTCGGCCGCGCCGCGGGCGATTCCGAAAAGGTCGCC ACCGAGGACGCCGACTGGCAGGTCGAGGATTATCACGAGAACTTCACAGAGAAGTTCAAGGACTATAAATCGACCAACAC GCTGCCCGGCGACTGA
Upstream 100 bases:
>100_bases GCGCCGCCGTCGCCGACCTTGAGCAGAAAAGCGCTCCCATTTTCGATGGCCATCGTCTAATCTCCTTGAAAAATAATCAT GCGGAATGGGGAGTCGCAGG
Downstream 100 bases:
>100_bases TCCGCGACCGCCAGGGCTCAGGCCGCAAGGCACCGGCACCGCACGACAATTTCGTGCCGCCAGCCGCCCTCGCGCCCAAA GCCAAAGCGTGTGCGGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 111; Mature: 111
Protein sequence:
>111_residues MLITTLVLAAMVQSPAATVDRTRAAFTKCLRDDLKRSLEAKIEEAEYGMRLKANCANERDAFRKAVIALGRAAGDSEKVA TEDADWQVEDYHENFTEKFKDYKSTNTLPGD
Sequences:
>Translated_111_residues MLITTLVLAAMVQSPAATVDRTRAAFTKCLRDDLKRSLEAKIEEAEYGMRLKANCANERDAFRKAVIALGRAAGDSEKVA TEDADWQVEDYHENFTEKFKDYKSTNTLPGD >Mature_111_residues MLITTLVLAAMVQSPAATVDRTRAAFTKCLRDDLKRSLEAKIEEAEYGMRLKANCANERDAFRKAVIALGRAAGDSEKVA TEDADWQVEDYHENFTEKFKDYKSTNTLPGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12419; Mature: 12419
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLITTLVLAAMVQSPAATVDRTRAAFTKCLRDDLKRSLEAKIEEAEYGMRLKANCANERD CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHH AFRKAVIALGRAAGDSEKVATEDADWQVEDYHENFTEKFKDYKSTNTLPGD HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLITTLVLAAMVQSPAATVDRTRAAFTKCLRDDLKRSLEAKIEEAEYGMRLKANCANERD CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHH AFRKAVIALGRAAGDSEKVATEDADWQVEDYHENFTEKFKDYKSTNTLPGD HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA