Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487463
Identifier: 103487463
GI number: 103487463
Start: 2088086
End: 2088877
Strand: Direct
Name: 103487463
Synonym: Sala_1980
Alternate gene names: NA
Gene position: 2088086-2088877 (Clockwise)
Preceding gene: 103487462
Following gene: 103487464
Centisome position: 62.42
GC content: 66.79
Gene sequence:
>792_bases ATGCGCACCATCTTGCTATTGGGTCTGGCTGCGGGGTCGTTGCTGCTGACAGGGCGTGCGGGCGCCGAACCGCCCGCTCT CGACTATGGCGTGCCCGCCGATCCCGACGCGCGCGTTTACACGGGGCATCCCGACCGCGTGCCAAGCGAGACCGAATATC GCCGCATCAGCGGCTATGATGCCGAGGGGCGCTGGACGGGCACCTGGGACGGCACCTATGAAACGCCCGACGGCCGCCGT TACGAGGGCCGCTACGAAGGCACGGTCGAAAGCCATGGCGCGCCCTATCCGCCGCCGCCGCATGGTTATTTCTGGCATCA CGGCGGTTATGATCCGCAATATGAAGCCGAAATGGAACGCCGCTGTGGCCGGGGGGGCACAGTGGGCGGCGCGGTTGTCG GTGGTGTCGTGGGGGGCATCGCCGGCAACCGCATCGCCGGGCGCGGCAACCGCACCGAAGGCACGCTGATCGGCGGCGGG CTGGGCGCGCTCGCGGGCAGCGCGATCGGCAGCGCCGAAGACAAGAAGAAGTGCGAACAATGGTGGGCCGGTCGCGGCGC GTATCGCGGCGGCTATACGACGAGCGTGCATCACGGCGGCTATGGTTATGGCTATGGTTGGTACGCGCCGGGCGTCGTCG TCACGACGATCATCAACGGCGCGCCCGTCGTCACCGAAACGGTCGAGACGACGACGCGCACCTATTATGAAGATGTGCCG GTGCGCAAACGCCATGTGGCGAAGAAAAAGTGGAAGCCGAAACCCAGGCCGAAGCCGCGCTGCGTCTGTTGA
Upstream 100 bases:
>100_bases CGGGACGCTACACTTACAGTTAACGGATTCGCGAATCCGCGCCCTTTTTGATAACAACTTGTTAACCAATCGGTTCGTGC CGGGGAACAGGGAGTTAGGC
Downstream 100 bases:
>100_bases TAACCCGCAAGATCTGGTCATCCGTGCCGGTCGCGAAAGCCCGTTTCCCACTGGGAGGCGGGCCTTTTGCCCGTTCGCAA GTCTGAACGCCAGCCAACCC
Product: 17 kDa surface antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP VRKRHVAKKKWKPKPRPKPRCVC
Sequences:
>Translated_263_residues MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP VRKRHVAKKKWKPKPRPKPRCVC >Mature_263_residues MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP VRKRHVAKKKWKPKPRPKPRCVC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28314; Mature: 28314
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYD CCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC AEGRWTGTWDGTYETPDGRRYEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMER CCCCEECCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH RCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGGLGALAGSAIGSAEDKKKCEQ HCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHH WWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP HHCCCCCCCCCCEEEEECCCCCCCCCHHCCCEEEEEHHCCCCEEEHHHHHHHHHHHHCCC VRKRHVAKKKWKPKPRPKPRCVC HHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYD CCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC AEGRWTGTWDGTYETPDGRRYEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMER CCCCEECCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH RCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGGLGALAGSAIGSAEDKKKCEQ HCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHH WWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP HHCCCCCCCCCCEEEEECCCCCCCCCHHCCCEEEEEHHCCCCEEEHHHHHHHHHHHHCCC VRKRHVAKKKWKPKPRPKPRCVC HHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA