Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487464
Identifier: 103487464
GI number: 103487464
Start: 2089089
End: 2089619
Strand: Direct
Name: 103487464
Synonym: Sala_1981
Alternate gene names: NA
Gene position: 2089089-2089619 (Clockwise)
Preceding gene: 103487463
Following gene: 103487465
Centisome position: 62.45
GC content: 65.91
Gene sequence:
>531_bases ATGGCTATCAAGGCCAATCTGACCAAGGCTGCAATCGGCGCGGCCACCGTCGGCGCGATGGTGATGAGCGCGAGCCCCGC GATGGCGCGCGACCGGCACGACCGCGACGGGATCAGCGCGGGCGAGATCATCGCCGGGGCCGTCGTGCTCGGCGGCCTCG CGGCGATCCTGTCGTCGGACAATGATCGCTACGACCGTTACGACCGACATGATTATCGCTATCGCGACCGCTACGGCGAC CCGCGTTATGGCTATGGCTATGACTATCGTCGCTATGGCAACAGCCGCAGCGCGGTTCGCCAGTGCGTCAATGCCGTCGA ATATGGCAGCCGCCGCTATGGCCGAACCGACGTCACCGAGGTGACGAGCATCGACCGAAAGCGGCACGGTTACAGGGTCA AGGGGCGCGTTGTGGTGCGCGACGGCTATGGCGGCCGCTGGGGCCGCGGCGGATATTATGACCGCGGCAAGTTCACCTGC GACGTCCGCTACGGCCGCGTCGACGACATCAGATTGTCGGGCCTGCGCTGA
Upstream 100 bases:
>100_bases CGGATAAGCGCGGGGTTCAGCGCCGCGTCACCGCCGTCCCGCTAAACCCTCATCAACAGGCCGCAACACGCCGCCTGCGC TTGTTTGAGGAGACCGAACC
Downstream 100 bases:
>100_bases CATCCCGACCCATGACACGCAGCCCGCCCGTGCCCCGGCACGCGGCGGGCCCTTGGTTCGCCCGCACCCTGCTTGCGCCA CGAACAGACGTCGACTCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MAIKANLTKAAIGAATVGAMVMSASPAMARDRHDRDGISAGEIIAGAVVLGGLAAILSSDNDRYDRYDRHDYRYRDRYGD PRYGYGYDYRRYGNSRSAVRQCVNAVEYGSRRYGRTDVTEVTSIDRKRHGYRVKGRVVVRDGYGGRWGRGGYYDRGKFTC DVRYGRVDDIRLSGLR
Sequences:
>Translated_176_residues MAIKANLTKAAIGAATVGAMVMSASPAMARDRHDRDGISAGEIIAGAVVLGGLAAILSSDNDRYDRYDRHDYRYRDRYGD PRYGYGYDYRRYGNSRSAVRQCVNAVEYGSRRYGRTDVTEVTSIDRKRHGYRVKGRVVVRDGYGGRWGRGGYYDRGKFTC DVRYGRVDDIRLSGLR >Mature_175_residues AIKANLTKAAIGAATVGAMVMSASPAMARDRHDRDGISAGEIIAGAVVLGGLAAILSSDNDRYDRYDRHDYRYRDRYGDP RYGYGYDYRRYGNSRSAVRQCVNAVEYGSRRYGRTDVTEVTSIDRKRHGYRVKGRVVVRDGYGGRWGRGGYYDRGKFTCD VRYGRVDDIRLSGLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19802; Mature: 19671
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKANLTKAAIGAATVGAMVMSASPAMARDRHDRDGISAGEIIAGAVVLGGLAAILSSD CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC NDRYDRYDRHDYRYRDRYGDPRYGYGYDYRRYGNSRSAVRQCVNAVEYGSRRYGRTDVTE CCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH VTSIDRKRHGYRVKGRVVVRDGYGGRWGRGGYYDRGKFTCDVRYGRVDDIRLSGLR HHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC >Mature Secondary Structure AIKANLTKAAIGAATVGAMVMSASPAMARDRHDRDGISAGEIIAGAVVLGGLAAILSSD CCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC NDRYDRYDRHDYRYRDRYGDPRYGYGYDYRRYGNSRSAVRQCVNAVEYGSRRYGRTDVTE CCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH VTSIDRKRHGYRVKGRVVVRDGYGGRWGRGGYYDRGKFTCDVRYGRVDDIRLSGLR HHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA