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The map label for this gene is yebR [H]

Identifier: 103487462

GI number: 103487462

Start: 2087214

End: 2087699

Strand: Direct

Name: yebR [H]

Synonym: Sala_1979

Alternate gene names: 103487462

Gene position: 2087214-2087699 (Clockwise)

Preceding gene: 103487461

Following gene: 103487463

Centisome position: 62.39

GC content: 71.6

Gene sequence:

>486_bases
ATGAGCTACACCCTCTCCTTCACCGCCACCGAGGCCGCCGAGCGGTGGGCCGAGGCGGGCGAGGCTGCGGCGGCGCTCGT
CGCAGGCGAGCATGACGGGATCGCCAACATGGCGAATGTCGCCGCGCTGATCTGGCAGGCGATCCCCGACCTCAACTGGG
CCGGATTTTATCGTTTCGACGGGCAGGAACTGGTGCTCGGCCCGTTCCAGGGCAAGGCGGCGTGCATCCGGATTCCGCTC
GACAAGGGCGTGTGCGGCGCCGCCGCGCGGTTGCGCGCGACGCAGCGCGTCGAGGATGTCCACGCCTTTCCGGGCCATAT
CGCGTGCGACGCGGACAGCCGCAGCGAACTCGTCGTGCCCGTGATCGCGAACGACCGGCTGGTCGGTGTGCTCGACCTCG
ACAGCCCGCTGCCCGCGCGCTTCACCGCCGCCGATCAGGCGGGCGCCGAGGCGCTGGTCGCGCGCATCGCGGGGGCGCTG
GCGTGA

Upstream 100 bases:

>100_bases
GCGGGCCATGGCAGCGGCAAGCCGACCGACAAGATCATCGCCGAGGCCGCCGACAAATATGCCTTTGCGGCGAAATGGAC
CGGGCTGGACGTCGAATAGG

Downstream 100 bases:

>100_bases
GGCAGCGATGGCGGTGCCGACAGGGGAATCCAGCATCAGGTGATGGCCACTTTGGGGTGGTTACCAGCCATCGCCCTCTC
CCCTTCAGGGGAGAGGATAG

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSYTLSFTATEAAERWAEAGEAAAALVAGEHDGIANMANVAALIWQAIPDLNWAGFYRFDGQELVLGPFQGKAACIRIPL
DKGVCGAAARLRATQRVEDVHAFPGHIACDADSRSELVVPVIANDRLVGVLDLDSPLPARFTAADQAGAEALVARIAGAL
A

Sequences:

>Translated_161_residues
MSYTLSFTATEAAERWAEAGEAAAALVAGEHDGIANMANVAALIWQAIPDLNWAGFYRFDGQELVLGPFQGKAACIRIPL
DKGVCGAAARLRATQRVEDVHAFPGHIACDADSRSELVVPVIANDRLVGVLDLDSPLPARFTAADQAGAEALVARIAGAL
A
>Mature_160_residues
SYTLSFTATEAAERWAEAGEAAAALVAGEHDGIANMANVAALIWQAIPDLNWAGFYRFDGQELVLGPFQGKAACIRIPLD
KGVCGAAARLRATQRVEDVHAFPGHIACDADSRSELVVPVIANDRLVGVLDLDSPLPARFTAADQAGAEALVARIAGALA

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=149, Percent_Identity=48.993288590604, Blast_Score=162, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6322781, Length=164, Percent_Identity=40.8536585365854, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 16826; Mature: 16695

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYTLSFTATEAAERWAEAGEAAAALVAGEHDGIANMANVAALIWQAIPDLNWAGFYRFD
CCEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC
GQELVLGPFQGKAACIRIPLDKGVCGAAARLRATQRVEDVHAFPGHIACDADSRSELVVP
CCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
VIANDRLVGVLDLDSPLPARFTAADQAGAEALVARIAGALA
EECCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SYTLSFTATEAAERWAEAGEAAAALVAGEHDGIANMANVAALIWQAIPDLNWAGFYRFD
CEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC
GQELVLGPFQGKAACIRIPLDKGVCGAAARLRATQRVEDVHAFPGHIACDADSRSELVVP
CCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
VIANDRLVGVLDLDSPLPARFTAADQAGAEALVARIAGALA
EECCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]