Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487463

Identifier: 103487463

GI number: 103487463

Start: 2088086

End: 2088877

Strand: Direct

Name: 103487463

Synonym: Sala_1980

Alternate gene names: NA

Gene position: 2088086-2088877 (Clockwise)

Preceding gene: 103487462

Following gene: 103487464

Centisome position: 62.42

GC content: 66.79

Gene sequence:

>792_bases
ATGCGCACCATCTTGCTATTGGGTCTGGCTGCGGGGTCGTTGCTGCTGACAGGGCGTGCGGGCGCCGAACCGCCCGCTCT
CGACTATGGCGTGCCCGCCGATCCCGACGCGCGCGTTTACACGGGGCATCCCGACCGCGTGCCAAGCGAGACCGAATATC
GCCGCATCAGCGGCTATGATGCCGAGGGGCGCTGGACGGGCACCTGGGACGGCACCTATGAAACGCCCGACGGCCGCCGT
TACGAGGGCCGCTACGAAGGCACGGTCGAAAGCCATGGCGCGCCCTATCCGCCGCCGCCGCATGGTTATTTCTGGCATCA
CGGCGGTTATGATCCGCAATATGAAGCCGAAATGGAACGCCGCTGTGGCCGGGGGGGCACAGTGGGCGGCGCGGTTGTCG
GTGGTGTCGTGGGGGGCATCGCCGGCAACCGCATCGCCGGGCGCGGCAACCGCACCGAAGGCACGCTGATCGGCGGCGGG
CTGGGCGCGCTCGCGGGCAGCGCGATCGGCAGCGCCGAAGACAAGAAGAAGTGCGAACAATGGTGGGCCGGTCGCGGCGC
GTATCGCGGCGGCTATACGACGAGCGTGCATCACGGCGGCTATGGTTATGGCTATGGTTGGTACGCGCCGGGCGTCGTCG
TCACGACGATCATCAACGGCGCGCCCGTCGTCACCGAAACGGTCGAGACGACGACGCGCACCTATTATGAAGATGTGCCG
GTGCGCAAACGCCATGTGGCGAAGAAAAAGTGGAAGCCGAAACCCAGGCCGAAGCCGCGCTGCGTCTGTTGA

Upstream 100 bases:

>100_bases
CGGGACGCTACACTTACAGTTAACGGATTCGCGAATCCGCGCCCTTTTTGATAACAACTTGTTAACCAATCGGTTCGTGC
CGGGGAACAGGGAGTTAGGC

Downstream 100 bases:

>100_bases
TAACCCGCAAGATCTGGTCATCCGTGCCGGTCGCGAAAGCCCGTTTCCCACTGGGAGGCGGGCCTTTTGCCCGTTCGCAA
GTCTGAACGCCAGCCAACCC

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR
YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG
LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP
VRKRHVAKKKWKPKPRPKPRCVC

Sequences:

>Translated_263_residues
MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR
YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG
LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP
VRKRHVAKKKWKPKPRPKPRCVC
>Mature_263_residues
MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYDAEGRWTGTWDGTYETPDGRR
YEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMERRCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGG
LGALAGSAIGSAEDKKKCEQWWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP
VRKRHVAKKKWKPKPRPKPRCVC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28314; Mature: 28314

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYD
CCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
AEGRWTGTWDGTYETPDGRRYEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMER
CCCCEECCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
RCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGGLGALAGSAIGSAEDKKKCEQ
HCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHH
WWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP
HHCCCCCCCCCCEEEEECCCCCCCCCHHCCCEEEEEHHCCCCEEEHHHHHHHHHHHHCCC
VRKRHVAKKKWKPKPRPKPRCVC
HHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRTILLLGLAAGSLLLTGRAGAEPPALDYGVPADPDARVYTGHPDRVPSETEYRRISGYD
CCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
AEGRWTGTWDGTYETPDGRRYEGRYEGTVESHGAPYPPPPHGYFWHHGGYDPQYEAEMER
CCCCEECCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
RCGRGGTVGGAVVGGVVGGIAGNRIAGRGNRTEGTLIGGGLGALAGSAIGSAEDKKKCEQ
HCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHH
WWAGRGAYRGGYTTSVHHGGYGYGYGWYAPGVVVTTIINGAPVVTETVETTTRTYYEDVP
HHCCCCCCCCCCEEEEECCCCCCCCCHHCCCEEEEEHHCCCCEEEHHHHHHHHHHHHCCC
VRKRHVAKKKWKPKPRPKPRCVC
HHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA