Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487460
Identifier: 103487460
GI number: 103487460
Start: 2084556
End: 2084951
Strand: Direct
Name: 103487460
Synonym: Sala_1977
Alternate gene names: NA
Gene position: 2084556-2084951 (Clockwise)
Preceding gene: 103487458
Following gene: 103487461
Centisome position: 62.32
GC content: 70.2
Gene sequence:
>396_bases ATGACCGGCAAATCCCTTTCCGAACGCATCGGCGACCTTGGCCGCCGCCTCGCGGTCGAGGCGCACACCGCCTGGCTCGC CGCGCGCGACCCGCGCGTGGCGTGGTTCGCGCGGCTGCTGGCGGTCGCGGTCGCCGCCTATGCGCTCTCGCCGATCGACC TCATCCCCGATTTCATCCCCGTGCTCGGCTGGATCGACGACCTCGTCATCCTGCCGCTCGGCCTGCTCGCGGTGCGGCGT CTGATCGCCGCGCCCTTGTGGTCCGAACTCCACGCCTTGGCCGAAACGGCGAGCGAGCGGCCCTCAAGCCGGGCGGGCAT GATCCTGATCCTGCTTATCTGGGCCGCCCTGCTCGCCATCGTCTATTGGGCGGTGCGCACCTCGCCGCTGCATTAG
Upstream 100 bases:
>100_bases TGGCGCCGCGACTGATGACGAACGAGCCCGCGACGGGCCAGCGTTCGACGCGCGCGCTTTTCAGTTGGATAGCCATGGCT AGACAGTAATGAGGGATGGC
Downstream 100 bases:
>100_bases AAGCGGCGTGCTGTATATCAAATCCGCTTGCCCCGCCCTTTTCCATCCTTACATATCGGCGCACGATAATGTCTTTTCCG GATAATGAGGATCGCCTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MTGKSLSERIGDLGRRLAVEAHTAWLAARDPRVAWFARLLAVAVAAYALSPIDLIPDFIPVLGWIDDLVILPLGLLAVRR LIAAPLWSELHALAETASERPSSRAGMILILLIWAALLAIVYWAVRTSPLH
Sequences:
>Translated_131_residues MTGKSLSERIGDLGRRLAVEAHTAWLAARDPRVAWFARLLAVAVAAYALSPIDLIPDFIPVLGWIDDLVILPLGLLAVRR LIAAPLWSELHALAETASERPSSRAGMILILLIWAALLAIVYWAVRTSPLH >Mature_130_residues TGKSLSERIGDLGRRLAVEAHTAWLAARDPRVAWFARLLAVAVAAYALSPIDLIPDFIPVLGWIDDLVILPLGLLAVRRL IAAPLWSELHALAETASERPSSRAGMILILLIWAALLAIVYWAVRTSPLH
Specific function: Unknown
COG id: COG3339
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14320; Mature: 14189
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGKSLSERIGDLGRRLAVEAHTAWLAARDPRVAWFARLLAVAVAAYALSPIDLIPDFIP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH VLGWIDDLVILPLGLLAVRRLIAAPLWSELHALAETASERPSSRAGMILILLIWAALLAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH VYWAVRTSPLH HHHHHHCCCCC >Mature Secondary Structure TGKSLSERIGDLGRRLAVEAHTAWLAARDPRVAWFARLLAVAVAAYALSPIDLIPDFIP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH VLGWIDDLVILPLGLLAVRRLIAAPLWSELHALAETASERPSSRAGMILILLIWAALLAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH VYWAVRTSPLH HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA