Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487335
Identifier: 103487335
GI number: 103487335
Start: 1946570
End: 1947037
Strand: Direct
Name: 103487335
Synonym: Sala_1851
Alternate gene names: NA
Gene position: 1946570-1947037 (Clockwise)
Preceding gene: 103487334
Following gene: 103487339
Centisome position: 58.19
GC content: 62.39
Gene sequence:
>468_bases ATGAACAGGATGATGTTCGCCGCTTCTGTGGCCCTTTTCGTCGTGGCGATGGCACCCGTCGCCCAGGCTCAGATGCCCAC ATGGTCGGCCGAGCAAGCCGCGGCATGGAAGGTCGTCGAGCAAAGCTGGGTCGACGATGTCGCCCAGAACGGCAAATGGC CGACAAATTACGCCGACCCGCAGATGGTCGTCTGGTCGTCCGAATTCGCCGCGCCGCGCGGCAAGGATTCGGCGGTGCGC TGGACCAAATTCCTGAATGGCCAGAGCAAGGTCATCCAATATGAACTGAGCCCGCAATCGATCTCGCTCAGCGGCAACAC GGCGGTCGTCACCTATGCGCTGACGATCGTCAACCAGCGCGGCACCGACAAGCCCGACTGGGGCAAGGAAGCGATCGTCG AAACGCTGGTGCGCGGCGAGGGCGGCTGGAAATTCCTGTCCTCGACCAGCTTCGCGCTCGGCAAATAG
Upstream 100 bases:
>100_bases TTGCAAGTCCCTTCGAATCATGTTCCCCTCTCACCGGGCCGTACCTTTGCGAACGAGTCGGGCTCCCTCAACGGGAGCCG ACGACAACTGGGGAAATAGC
Downstream 100 bases:
>100_bases CGGCCGTCGCGGCGGCTATTTCGGACAATAGCCGCCGCAGGTCGATCATTTCCACCGCGCGAACCAGATCAGCACGACGC CGACCACCGCGGTGACGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MNRMMFAASVALFVVAMAPVAQAQMPTWSAEQAAAWKVVEQSWVDDVAQNGKWPTNYADPQMVVWSSEFAAPRGKDSAVR WTKFLNGQSKVIQYELSPQSISLSGNTAVVTYALTIVNQRGTDKPDWGKEAIVETLVRGEGGWKFLSSTSFALGK
Sequences:
>Translated_155_residues MNRMMFAASVALFVVAMAPVAQAQMPTWSAEQAAAWKVVEQSWVDDVAQNGKWPTNYADPQMVVWSSEFAAPRGKDSAVR WTKFLNGQSKVIQYELSPQSISLSGNTAVVTYALTIVNQRGTDKPDWGKEAIVETLVRGEGGWKFLSSTSFALGK >Mature_155_residues MNRMMFAASVALFVVAMAPVAQAQMPTWSAEQAAAWKVVEQSWVDDVAQNGKWPTNYADPQMVVWSSEFAAPRGKDSAVR WTKFLNGQSKVIQYELSPQSISLSGNTAVVTYALTIVNQRGTDKPDWGKEAIVETLVRGEGGWKFLSSTSFALGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17006; Mature: 17006
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRMMFAASVALFVVAMAPVAQAQMPTWSAEQAAAWKVVEQSWVDDVAQNGKWPTNYADP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QMVVWSSEFAAPRGKDSAVRWTKFLNGQSKVIQYELSPQSISLSGNTAVVTYALTIVNQR EEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEECCCCEEEEEEEEEEECC GTDKPDWGKEAIVETLVRGEGGWKFLSSTSFALGK CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCC >Mature Secondary Structure MNRMMFAASVALFVVAMAPVAQAQMPTWSAEQAAAWKVVEQSWVDDVAQNGKWPTNYADP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QMVVWSSEFAAPRGKDSAVRWTKFLNGQSKVIQYELSPQSISLSGNTAVVTYALTIVNQR EEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEECCCCEEEEEEEEEEECC GTDKPDWGKEAIVETLVRGEGGWKFLSSTSFALGK CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA