| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487231
Identifier: 103487231
GI number: 103487231
Start: 1839060
End: 1839701
Strand: Direct
Name: 103487231
Synonym: Sala_1746
Alternate gene names: NA
Gene position: 1839060-1839701 (Clockwise)
Preceding gene: 103487230
Following gene: 103487232
Centisome position: 54.98
GC content: 66.04
Gene sequence:
>642_bases ATGTGGAAATGGATCCGGATTCCCAAGGGCATTGCCCTGGTCGCGTTCCTGCTGCCGTGGATGACGATCAGCTGCTCCGA ACAGAAGATCGCCGAAGCGACCGGCTTCGGCCTTGCCTTCGGCAATGTGACGACGATGGGACGCGCGGCATCGGCTGGCG ATGGTGCTGCGATGAATCTGTGGCTGGTCCTCGCGCTGCTGGCGATTGCGGGAGGCCTGTTCCTGCTCTTCACCCGCGGG CGGGAAGCGGCGAAACTGGTGCTCGGCACGTCGGTTGCGGCACTGGTGCTGATCTTCCTCGGCACCTGGCGCTATAGCAA GGATGCGATCATGGCCGAGGCCGCCAGAAACGGCGGTGGCGACATGGACCGCGCGGCGATGGCGATGATCCAGGTCAATT GGGAAATCGGATATTGGCTGGCCCTGTTCGCGCTGATCGCCGCCGCGGCGATGGCGTGGATCGTGATGAGCGGCAAGGAG GCCGAGGCCGAGGCGAAGATGCGCTCGCTCGCGACCGACGCCGCTGACGCGGCCAAGAGCGCCGCCGCGAAGGCGAGCGA GGCGATCGAGGCCGCCACCGACAAGAAGGATGGCGACAAGAAGGATGGCGACGGCCCCGGCGGCGAACCGCCCAAAGCCT GA
Upstream 100 bases:
>100_bases TATGCCGTGATCCGCTTCGACCCTTGAACGGCGATTTGACTTGGCGGGGCAAATGGCTAGCCTGCCTGCCGGGTCGGTAT TACCGAGAGGGGGAAACAGC
Downstream 100 bases:
>100_bases CGCTCATCCCAAAGCAAACCGCCGCTTGCCGCGCGTCGGCAAGCGGCTAATGAACCATCATGCCCACCGCGAAATCGACG AAGCGCCGCAAATCCCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MWKWIRIPKGIALVAFLLPWMTISCSEQKIAEATGFGLAFGNVTTMGRAASAGDGAAMNLWLVLALLAIAGGLFLLFTRG REAAKLVLGTSVAALVLIFLGTWRYSKDAIMAEAARNGGGDMDRAAMAMIQVNWEIGYWLALFALIAAAAMAWIVMSGKE AEAEAKMRSLATDAADAAKSAAAKASEAIEAATDKKDGDKKDGDGPGGEPPKA
Sequences:
>Translated_213_residues MWKWIRIPKGIALVAFLLPWMTISCSEQKIAEATGFGLAFGNVTTMGRAASAGDGAAMNLWLVLALLAIAGGLFLLFTRG REAAKLVLGTSVAALVLIFLGTWRYSKDAIMAEAARNGGGDMDRAAMAMIQVNWEIGYWLALFALIAAAAMAWIVMSGKE AEAEAKMRSLATDAADAAKSAAAKASEAIEAATDKKDGDKKDGDGPGGEPPKA >Mature_213_residues MWKWIRIPKGIALVAFLLPWMTISCSEQKIAEATGFGLAFGNVTTMGRAASAGDGAAMNLWLVLALLAIAGGLFLLFTRG REAAKLVLGTSVAALVLIFLGTWRYSKDAIMAEAARNGGGDMDRAAMAMIQVNWEIGYWLALFALIAAAAMAWIVMSGKE AEAEAKMRSLATDAADAAKSAAAKASEAIEAATDKKDGDKKDGDGPGGEPPKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22269; Mature: 22269
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKWIRIPKGIALVAFLLPWMTISCSEQKIAEATGFGLAFGNVTTMGRAASAGDGAAMNL CCCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCHHHCCCCCCCCCCHHHHH WLVLALLAIAGGLFLLFTRGREAAKLVLGTSVAALVLIFLGTWRYSKDAIMAEAARNGGG HHHHHHHHHHHHHHEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC DMDRAAMAMIQVNWEIGYWLALFALIAAAAMAWIVMSGKEAEAEAKMRSLATDAADAAKS CHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH AAAKASEAIEAATDKKDGDKKDGDGPGGEPPKA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MWKWIRIPKGIALVAFLLPWMTISCSEQKIAEATGFGLAFGNVTTMGRAASAGDGAAMNL CCCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCHHHCCCCCCCCCCHHHHH WLVLALLAIAGGLFLLFTRGREAAKLVLGTSVAALVLIFLGTWRYSKDAIMAEAARNGGG HHHHHHHHHHHHHHEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC DMDRAAMAMIQVNWEIGYWLALFALIAAAAMAWIVMSGKEAEAEAKMRSLATDAADAAKS CHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH AAAKASEAIEAATDKKDGDKKDGDGPGGEPPKA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA