| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487202
Identifier: 103487202
GI number: 103487202
Start: 1807554
End: 1808123
Strand: Direct
Name: 103487202
Synonym: Sala_1717
Alternate gene names: NA
Gene position: 1807554-1808123 (Clockwise)
Preceding gene: 103487197
Following gene: 103487203
Centisome position: 54.03
GC content: 70.35
Gene sequence:
>570_bases ATGCCCAGATCCCAATCCCCGACCTGCGACGTCGACGCGCTGATCGACGCCGTCATCGACCGCGAAGGCCGATATGTAAA CCACCCCGCCGACCGCGGCGGCCCGACCTGCTGGGGGATCACCGAAGCGGTGGCGCGCGCCGAGGGCTATGCCGGCCCGA TGCGCGCGATGCCGCGCGATTCCGCTGCTGCCATCTATCGCCGCCTCTATTGGCTGCGCCCCGGCTTCGACAGGGTCGCG CTGCGCGCGCCTGCGATCGCTGCCGAACTCTTCGACACCGGGGTCAACATGGGCACCGCCACCGCGACCGGATTTCTTCA GCGCGCGCTCAACGCGCTCAACCGCAGCGCGCGCGACTATCCCGACATCGCGGTCGACCGCGCCATCGGGCCGCGCACGC TGGCGGCGCTCGACGGCTTCCTCAAGGCGCGCGGCAAGCGCGGGGAGGTCGTCCTGCTGCGTGCGATCGAGGCGTTGCAG GGCGAACGCTACATCGCGCTCGCCGAACGCCGCCCCAGCCAGGAGGCCTTTCTCTATGGCTGGCTCGCTAACCGCATCGG TGAGGCGTGA
Upstream 100 bases:
>100_bases ATAGTTCGCGCACCTGCAAGGCTCGCATGGCGAAAATCCTTTCCTACATTGTTCCTATATGGTTCGCTGCTCCGCTCAAC CGAACCAACAGGAGCGAATC
Downstream 100 bases:
>100_bases TGCGCGCCATTGGGCTGACTTTTACTGACCTTTGACCACAGAGGAGAATAGACATGAGCATCATCGAAGGCCTGATCGGC CCGATCGCCAAGCTGATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MPRSQSPTCDVDALIDAVIDREGRYVNHPADRGGPTCWGITEAVARAEGYAGPMRAMPRDSAAAIYRRLYWLRPGFDRVA LRAPAIAAELFDTGVNMGTATATGFLQRALNALNRSARDYPDIAVDRAIGPRTLAALDGFLKARGKRGEVVLLRAIEALQ GERYIALAERRPSQEAFLYGWLANRIGEA
Sequences:
>Translated_189_residues MPRSQSPTCDVDALIDAVIDREGRYVNHPADRGGPTCWGITEAVARAEGYAGPMRAMPRDSAAAIYRRLYWLRPGFDRVA LRAPAIAAELFDTGVNMGTATATGFLQRALNALNRSARDYPDIAVDRAIGPRTLAALDGFLKARGKRGEVVLLRAIEALQ GERYIALAERRPSQEAFLYGWLANRIGEA >Mature_188_residues PRSQSPTCDVDALIDAVIDREGRYVNHPADRGGPTCWGITEAVARAEGYAGPMRAMPRDSAAAIYRRLYWLRPGFDRVAL RAPAIAAELFDTGVNMGTATATGFLQRALNALNRSARDYPDIAVDRAIGPRTLAALDGFLKARGKRGEVVLLRAIEALQG ERYIALAERRPSQEAFLYGWLANRIGEA
Specific function: Unknown
COG id: COG3926
COG function: function code R; Putative secretion activating protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20659; Mature: 20528
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSQSPTCDVDALIDAVIDREGRYVNHPADRGGPTCWGITEAVARAEGYAGPMRAMPRD CCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH SAAAIYRRLYWLRPGFDRVALRAPAIAAELFDTGVNMGTATATGFLQRALNALNRSARDY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC PDIAVDRAIGPRTLAALDGFLKARGKRGEVVLLRAIEALQGERYIALAERRPSQEAFLYG CCHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHH WLANRIGEA HHHHHCCCC >Mature Secondary Structure PRSQSPTCDVDALIDAVIDREGRYVNHPADRGGPTCWGITEAVARAEGYAGPMRAMPRD CCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH SAAAIYRRLYWLRPGFDRVALRAPAIAAELFDTGVNMGTATATGFLQRALNALNRSARDY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC PDIAVDRAIGPRTLAALDGFLKARGKRGEVVLLRAIEALQGERYIALAERRPSQEAFLYG CCHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHH WLANRIGEA HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA