| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487184
Identifier: 103487184
GI number: 103487184
Start: 1789793
End: 1791037
Strand: Direct
Name: 103487184
Synonym: Sala_1699
Alternate gene names: NA
Gene position: 1789793-1791037 (Clockwise)
Preceding gene: 103487183
Following gene: 103487187
Centisome position: 53.5
GC content: 72.77
Gene sequence:
>1245_bases ATGGCGCCGAGCGCCGACGCGGTGGCTGGCGGCGCGGGCGCCGCGCCACAGGAGGAAGCGCCCACCCCGAACCGCCGATC AGGCCGGCGATTCGCCGCCATCATCCTTGCCGGAAGGCGTCCTGCCGTCGCGCCGCCACGGCTCGTCGCGGAAAACCGCC GTTTGCGGCAGCATAATGCGCGGCGCGCTCGTTTTGTCTGCGCTATGACGAGAAATATCGCCCTCTCCCGCCCCGCCACG AGCGCGATTGCCGCGTTCCTGGCCCTTTCCACCCCCACCGCTTTCGCTCAGGATGCGCCGACGATCCCGATGACGCCACC GGTCGCGGCGCCGACCCCGCAGACAACGCCGACAACGCCCGGACCGGCGGCGCCCGCCACCGCCACGACGCCGCCAGATG TCGCACCGTCGACGCAGCCGGCGGCCCCTGCGCCCGTCATCCGTGTCCCGCTGGAGATTGCCCCGCTCGAAACGGCCCCC GCCGAGGCTGAGGCGGCTCCGCCCCCCGTGCGCGGCGAGGCTCCCCCGCGCGCTGAGCGCAGCGCACGTCCGACCGCGGC ACCGGCGCGAACCGGGTCGGCTCCGGCCGTCCCGCCGGAACCCGCCGCTGCCCAAGCTGCTGAAACGGCTGCGCCCGCTA CACCTCCGATGTTCACCGAGGTGGCACCCGTCGCCGATCCGGCACCGGCCGCTGCGGACACCACCGCCGACGACCGCTTT CCGTGGGAGCTGGCAGGGGGCGCCGCATTGCTGCTCGCGCTTGGCGGCGCGGGTCTGGTGCTCGCGCGTCGTCGCCGCGC CGGTGCCGCCACGGCCGAATATGCGGAAGTCGAATATGCCGAACCGGTAAAGGCGTCCGAAAACGTCGCTTCGGCTTCCG ACCAGCCATGGGTCAACCCCGTCTACAGCACGCCGGCGGCTGACGCGCGCTCGACCCCGGCCTTCGCCACGCCGCCGAGC GGCCGTATCGGTCGCCACCAAGCGATGGCAATGGCCGGTCCGACGCCGGACAACCCGTTTCTTACGCTGTCAAGGCGATT GAAGCGCGCGCGCTTCCTCGACCGTCAGGAACGGCTCGCCTACGAGCAGACGCTCGGCGCGCAGAAGGACATGACGCGCA AGCCCGTCAGCGCGTGGGAGATTTCGCAGCGCCAAACGCCGGTCGCGCCGCAGGAGCAGGAGGTCCGCCGCCCCGAACCG GCGCGCGAACACCCCGGCCTCCGCCCCGGCTTCGCGCACTCCTGA
Upstream 100 bases:
>100_bases GGCAATTGGGTCGCGGACTGAGGGGGGCTCCGCTCCCGGATGCGCGCGCTGATAGGTTGCCGATCGCACCGGCCCGCCCG CGGAAGAGATCGGCGGCGCG
Downstream 100 bases:
>100_bases CCGGCCGTAACCGGATTCAACAAAAAAGGGCGGCGCCTTTCGGCACCGCCCTTTCTTTGTCGCAGCGCGGCGGGAAGGCC GCCGAAGCCGAACCGGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MAPSADAVAGGAGAAPQEEAPTPNRRSGRRFAAIILAGRRPAVAPPRLVAENRRLRQHNARRARFVCAMTRNIALSRPAT SAIAAFLALSTPTAFAQDAPTIPMTPPVAAPTPQTTPTTPGPAAPATATTPPDVAPSTQPAAPAPVIRVPLEIAPLETAP AEAEAAPPPVRGEAPPRAERSARPTAAPARTGSAPAVPPEPAAAQAAETAAPATPPMFTEVAPVADPAPAAADTTADDRF PWELAGGAALLLALGGAGLVLARRRRAGAATAEYAEVEYAEPVKASENVASASDQPWVNPVYSTPAADARSTPAFATPPS GRIGRHQAMAMAGPTPDNPFLTLSRRLKRARFLDRQERLAYEQTLGAQKDMTRKPVSAWEISQRQTPVAPQEQEVRRPEP AREHPGLRPGFAHS
Sequences:
>Translated_414_residues MAPSADAVAGGAGAAPQEEAPTPNRRSGRRFAAIILAGRRPAVAPPRLVAENRRLRQHNARRARFVCAMTRNIALSRPAT SAIAAFLALSTPTAFAQDAPTIPMTPPVAAPTPQTTPTTPGPAAPATATTPPDVAPSTQPAAPAPVIRVPLEIAPLETAP AEAEAAPPPVRGEAPPRAERSARPTAAPARTGSAPAVPPEPAAAQAAETAAPATPPMFTEVAPVADPAPAAADTTADDRF PWELAGGAALLLALGGAGLVLARRRRAGAATAEYAEVEYAEPVKASENVASASDQPWVNPVYSTPAADARSTPAFATPPS GRIGRHQAMAMAGPTPDNPFLTLSRRLKRARFLDRQERLAYEQTLGAQKDMTRKPVSAWEISQRQTPVAPQEQEVRRPEP AREHPGLRPGFAHS >Mature_413_residues APSADAVAGGAGAAPQEEAPTPNRRSGRRFAAIILAGRRPAVAPPRLVAENRRLRQHNARRARFVCAMTRNIALSRPATS AIAAFLALSTPTAFAQDAPTIPMTPPVAAPTPQTTPTTPGPAAPATATTPPDVAPSTQPAAPAPVIRVPLEIAPLETAPA EAEAAPPPVRGEAPPRAERSARPTAAPARTGSAPAVPPEPAAAQAAETAAPATPPMFTEVAPVADPAPAAADTTADDRFP WELAGGAALLLALGGAGLVLARRRRAGAATAEYAEVEYAEPVKASENVASASDQPWVNPVYSTPAADARSTPAFATPPSG RIGRHQAMAMAGPTPDNPFLTLSRRLKRARFLDRQERLAYEQTLGAQKDMTRKPVSAWEISQRQTPVAPQEQEVRRPEPA REHPGLRPGFAHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43023; Mature: 42892
Theoretical pI: Translated: 10.78; Mature: 10.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPSADAVAGGAGAAPQEEAPTPNRRSGRRFAAIILAGRRPAVAPPRLVAENRRLRQHNA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH RRARFVCAMTRNIALSRPATSAIAAFLALSTPTAFAQDAPTIPMTPPVAAPTPQTTPTTP HHHHHHHHHHHCEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC GPAAPATATTPPDVAPSTQPAAPAPVIRVPLEIAPLETAPAEAEAAPPPVRGEAPPRAER CCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH SARPTAAPARTGSAPAVPPEPAAAQAAETAAPATPPMFTEVAPVADPAPAAADTTADDRF CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC PWELAGGAALLLALGGAGLVLARRRRAGAATAEYAEVEYAEPVKASENVASASDQPWVNP CHHHHCCCEEEEHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCCCC VYSTPAADARSTPAFATPPSGRIGRHQAMAMAGPTPDNPFLTLSRRLKRARFLDRQERLA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH YEQTLGAQKDMTRKPVSAWEISQRQTPVAPQEQEVRRPEPAREHPGLRPGFAHS HHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure APSADAVAGGAGAAPQEEAPTPNRRSGRRFAAIILAGRRPAVAPPRLVAENRRLRQHNA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH RRARFVCAMTRNIALSRPATSAIAAFLALSTPTAFAQDAPTIPMTPPVAAPTPQTTPTTP HHHHHHHHHHHCEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC GPAAPATATTPPDVAPSTQPAAPAPVIRVPLEIAPLETAPAEAEAAPPPVRGEAPPRAER CCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH SARPTAAPARTGSAPAVPPEPAAAQAAETAAPATPPMFTEVAPVADPAPAAADTTADDRF CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC PWELAGGAALLLALGGAGLVLARRRRAGAATAEYAEVEYAEPVKASENVASASDQPWVNP CHHHHCCCEEEEHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCCCC VYSTPAADARSTPAFATPPSGRIGRHQAMAMAGPTPDNPFLTLSRRLKRARFLDRQERLA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH YEQTLGAQKDMTRKPVSAWEISQRQTPVAPQEQEVRRPEPAREHPGLRPGFAHS HHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA