| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487178
Identifier: 103487178
GI number: 103487178
Start: 1783430
End: 1784266
Strand: Direct
Name: 103487178
Synonym: Sala_1693
Alternate gene names: NA
Gene position: 1783430-1784266 (Clockwise)
Preceding gene: 103487177
Following gene: 103487179
Centisome position: 53.31
GC content: 69.3
Gene sequence:
>837_bases ATGGACGATTATTCCGCCTGGATCGGCCGCGGTGAAACGCGCGAGGATGTCGCGACTGCGGTGCCGATCGAAGGCCTCGC CGCTCTGCTCGACCACGACGCGCCGCCATGGGTGCCCGGCATGGTGCCACCGCTCGGGCACTGGCTCTATTTCCTGCCGA CCGCGCGCCAGTCAACGATTGGCGAGGATGGACACCCCCGCCGCGACGGGCACGGCCTGCTGCCGCCCGTGCCGCTCCCT CGCCGCATGTGGGCGGGCAGCCGCATCGATTTCCTCTCCCCCATTCCCATCGGCGCGGCGCTGACGCGCGTGACGACGAT CGATGCGATCAGGCCCAGACGCGGCGCGAGCGGCGATCTTCTGTTCGTGACGCTTCGGCACGAGATATCGGCAAATGGCG TCGCCGCGATCCGCGAAGAACAGGATATCGTGTTTCGCGAGGCCGCAAGCGCGGCACCGGTCCCCGCCGCCACGCCCCCG GCTGCCGCCGCCCCCGAACCCGCCGATACCGTCCGCAGCATCATGCCCGACCCTGTGCTGCTCTTCCGTTATTCGGCGCT GACCTTCAACGCGCACCGCATCCATTATGACCGCGACTATGCAGTGGGTGTCGAGGGTTATGCCGGGCTCGTCGTCCACG GCCCGCTCATCGCGACGCTGCTGATGGATCATGCCCTGCGCGCCGGGCTGTCCCCCCGCACCTTCGCTTTCCGCGCCGAG GCGCCGCTCACCGACGGGGCGCCGTTCGATCTCTGCCTCGCGTACGACGCCGACGGTGCGCGGCTATGGGCGCGCAATTC CGCCGGACGCCGCACGATGCACGTCAGCCTGACCTGA
Upstream 100 bases:
>100_bases AGTTCCGCGAAACCCGGCTCTATCAGGTCGCGCCGATCAGCACGAACCTCATCCTCAGCCATGTCGCAACGCACGCGCTT GGCCTGCCCAAGAGCTTCTG
Downstream 100 bases:
>100_bases ACCAACCGCCGAAAGCAGCGCGATCGGTTGGGTGGCGCATCGCCCAAACATGGAATCCAAGCCGTGTCGCGATGACGCGT TGAACCACGCCGACGGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT
Sequences:
>Translated_278_residues MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT >Mature_278_residues MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT
Specific function: Unknown
COG id: COG3777
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30023; Mature: 30023
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTI CCCCHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHCC GEDGHPRRDGHGLLPPVPLPRRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDL CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE LFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPPAAAAPEPADTVRSIMPDPVL EEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE LFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE EEEEEEEEEEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEC APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT CCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEC >Mature Secondary Structure MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTI CCCCHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHCC GEDGHPRRDGHGLLPPVPLPRRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDL CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE LFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPPAAAAPEPADTVRSIMPDPVL EEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE LFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE EEEEEEEEEEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEC APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT CCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA